View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9628_low_39 (Length: 243)
Name: NF9628_low_39
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9628_low_39 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 10221 - 10009
Alignment:
| Q |
18 |
ccttttggagtctggtaagatattcaaacttgcaactggtatctgccataacaattatctttattggtctgctgcgtttatcgttaggaattaacaggtg |
117 |
Q |
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| T |
10221 |
ccttttggagtctggtaagatattcaaacttgcaactggtatctgccataacaattatctttattggtctgctgcgtttatcgttaggaattaacggatg |
10122 |
T |
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| Q |
118 |
gttgatcgatctctttcatggattcacatggtttttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgtggatgttttct |
217 |
Q |
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| T |
10121 |
gtggatcgatctctttcatggattcacatggttgttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgtggatgttttct |
10022 |
T |
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| Q |
218 |
tttttcatgttct |
230 |
Q |
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||||||||||||| |
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| T |
10021 |
tttttcatgttct |
10009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 41648302 - 41648218
Alignment:
| Q |
146 |
tggtttttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgtggatgttttcttttttcatgttct |
230 |
Q |
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| T |
41648302 |
tggttgttagtaagtttaattgtaagtcttcagataaaacaactaacaagaacatggttgtggatgttttctgttttcatattct |
41648218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 11661866 - 11661969
Alignment:
| Q |
114 |
ggtggttgatcgatctctttcatggattcacatggtttttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgtggatgtt |
213 |
Q |
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| T |
11661866 |
ggtggttgctcgaactctttcatggatcaacatggttgtttgtaagtttaactataagtcttcagataaaacaactgccaagagcatggttttggatgtt |
11661965 |
T |
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| Q |
214 |
ttct |
217 |
Q |
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|||| |
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| T |
11661966 |
ttct |
11661969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 11633185 - 11633082
Alignment:
| Q |
114 |
ggtggttgatcgatctctttcatggattcacatggtttttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgtggatgtt |
213 |
Q |
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| T |
11633185 |
ggtggttgctagaactctttcatggactcacatggttgtcgataagtttatctataagtcttcggataaaacaactctcaagagcatggttgtggatgtt |
11633086 |
T |
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| Q |
214 |
ttct |
217 |
Q |
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|||| |
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| T |
11633085 |
ttct |
11633082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 11617050 - 11617153
Alignment:
| Q |
114 |
ggtggttgatcgatctctttcatggattcacatggtttttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgtggatgtt |
213 |
Q |
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| T |
11617050 |
ggtggttgctagaactctttcatggtttaacatggttgtcgataagtttatctgtcagccttcagatgaaacaacttacaagagcatggttgtggatgtt |
11617149 |
T |
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| Q |
214 |
ttct |
217 |
Q |
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|||| |
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| T |
11617150 |
ttct |
11617153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 11711703 - 11711611
Alignment:
| Q |
114 |
ggtggttgatcgatctctttcatggattcacatggtttttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgt |
206 |
Q |
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| T |
11711703 |
ggtggttactcgaactctttcacggttcaacatggttgtttgtaagtttaactataagtcttcggataaaacaacttccacgagcatggttgt |
11711611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 11711847 - 11711796
Alignment:
| Q |
18 |
ccttttggagtctggtaagatattcaaacttgcaactggtatctgccataac |
69 |
Q |
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| T |
11711847 |
ccttttggagtctagtaagatattcaaacttgcagctagtttcttccataac |
11711796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 11414 - 11495
Alignment:
| Q |
129 |
tctttcatggattcacatggtttttagtaagtttaattgtaagtcttcagataaaacaactcacaagagcatggttgtggat |
210 |
Q |
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|||||||||| ||||||||||| | ||||||||||| |||||| |||||| ||||||||| | | |||||||| |||||||| |
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| T |
11414 |
tctttcatggcttcacatggttgtcagtaagtttaactgtaagccttcagctaaaacaaccctcgagagcatgtttgtggat |
11495 |
T |
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