View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9628_low_42 (Length: 240)
Name: NF9628_low_42
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9628_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 42077228 - 42077047
Alignment:
| Q |
21 |
agtggaaatcagtatcatagaaatgtgcaaactgtagaaagaaaggactcttagaactattgttttccaaggtttaattctcaagcactatgatgccagg |
120 |
Q |
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| T |
42077228 |
agtggaaataagtatcatagaaatgtggaaactgtagaaagaaaggactattagacctattgttttccaaggtttaattctcaagcactgagatgccaga |
42077129 |
T |
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| Q |
121 |
gactcgtttaagcaagcactttgcttcattttctaattcgatcacttggttgaatacattctt-ggactttcactaagttga |
201 |
Q |
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| T |
42077128 |
gattcgtttaagcaagcactttgcttcattttctaattcgatcgcttggttgaatacattcttgggactttcactaagttga |
42077047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 48466455 - 48466274
Alignment:
| Q |
21 |
agtggaaatcagtatcatagaaatgtgcaaactgtagaaagaaaggactcttagaactattgttttccaaggtttaattctcaagcactatgatgccagg |
120 |
Q |
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| T |
48466455 |
agtggaactcagtatcatagaaatgtggaaactgtagaaagaaaggactattagacctactgttttccaaggtttaattctcgagcactgaaattcccgg |
48466356 |
T |
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| Q |
121 |
gactcgtttaagcaagcactttgcttcattttctaattcgatcacttggttgaatacattctt-ggactttcactaagttga |
201 |
Q |
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| T |
48466355 |
gactcgtttaatcaagaactttgcttcattttctaattcgatcgcttggttgaatacattcttgggactttcactaaattga |
48466274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 25585320 - 25585238
Alignment:
| Q |
96 |
aattctcaagcactatgatgccagggactcgtttaagcaagcactttgcttcattttctaattcgatcacttggttgaataca |
178 |
Q |
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||||||||||||||| ||| ||||||| ||||||||| || |||||||||||||| ||||||| ||| |||||||||||||| |
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| T |
25585320 |
aattctcaagcactaagattccagggaatcgtttaagagaggactttgcttcatttgctaattcaatcgcttggttgaataca |
25585238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 25590203 - 25590121
Alignment:
| Q |
96 |
aattctcaagcactatgatgccagggactcgtttaagcaagcactttgcttcattttctaattcgatcacttggttgaataca |
178 |
Q |
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|||||||||||||| || |||||||| |||||| ||||| |||||||||||||| ||||||| ||| |||| || |||||| |
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| T |
25590203 |
aattctcaagcactgagacgccagggattcgttttagcaaaaactttgcttcatttgctaattcaatcgcttgtttaaataca |
25590121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 25599855 - 25599773
Alignment:
| Q |
96 |
aattctcaagcactatgatgccagggactcgtttaagcaagcactttgcttcattttctaattcgatcacttggttgaataca |
178 |
Q |
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|||||||||||||| || |||||||| |||||| ||||| |||||||||||||| ||||||| ||| |||| || |||||| |
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| T |
25599855 |
aattctcaagcactgagacgccagggattcgttttagcaaaaactttgcttcatttgctaattcaatcgcttgtttaaataca |
25599773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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