View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9628_low_46 (Length: 237)

Name: NF9628_low_46
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9628_low_46
NF9628_low_46
[»] chr1 (8 HSPs)
chr1 (9-237)||(31644088-31644316)
chr1 (32-234)||(36989231-36989433)
chr1 (53-227)||(12774849-12775023)
chr1 (53-228)||(12804550-12804725)
chr1 (53-236)||(50788850-50789033)
chr1 (81-236)||(42287057-42287212)
chr1 (19-234)||(28496139-28496354)
chr1 (47-120)||(4160283-4160356)
[»] chr7 (2 HSPs)
chr7 (110-237)||(40749359-40749486)
chr7 (104-234)||(44150833-44150963)
[»] chr4 (2 HSPs)
chr4 (83-207)||(22085566-22085690)
chr4 (129-234)||(30518181-30518286)
[»] chr8 (2 HSPs)
chr8 (46-237)||(33186640-33186831)
chr8 (131-236)||(5788754-5788859)
[»] chr2 (3 HSPs)
chr2 (66-234)||(38895890-38896058)
chr2 (131-234)||(42898288-42898391)
chr2 (89-207)||(40040737-40040855)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 31644316 - 31644088
Alignment:
Q  9 agcaaaggaacaacaaagatgttattaaaaagagagcttatgtttgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttac 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31644316 agcaaaggaacaacaaagatgttattaaaaagagagcttatgtttgtccagagccttcatgtgttcatcataacccttcaagggctcttggagatcttac 31644217  T
Q  109 aggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31644216 aggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcac 31644117  T
Q  209 tctaaaacctgtggtactagagaatataa 237  Q
    |||||||||||||||||| ||||||||||    
T  31644116 tctaaaacctgtggtactcgagaatataa 31644088  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 32 - 234
Target Start/End: Original strand, 36989231 - 36989433
Alignment:
Q  32 attaaaaagagagcttatgtttgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttacaggaattaagaaacattatagta 131  Q
    |||| |||||| | |||||||||||| || ||||||||||| || ||||||||| ||||||| ||||| |||||||| |||||||| || || | | |||    
T  36989231 attagaaagagggtttatgtttgtcctgaaccttcatgtgtacaccataaccctgcaagagcacttggtgatcttactggaattaaaaagcacttttgta 36989330  T
Q  132 gaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactagaga 231  Q
    |||| |||||||||||||| ||||||||||||||||| || ||||  ||||||||||| ||||||||||||||||| || ||||  |||||||| || ||    
T  36989331 gaaagcatggtgagaaaaagtggaaatgtgataagtgttctaagaaatatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaaggga 36989430  T
Q  232 ata 234  Q
    |||    
T  36989431 ata 36989433  T

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Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 12774849 - 12775023
Alignment:
Q  53 tgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaat 152  Q
    |||||||| ||  |||||||||| ||| |||||||||| |||||||| || || || |||||||||||||| |||  |||||| ||||||||||||||||    
T  12774849 tgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaat 12774948  T
Q  153 ggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtacta 227  Q
    |||| ||||| ||||| || ||||  ||||||||||| ||||||||||||||||| |||||||| ||||||||||    
T  12774949 ggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtacta 12775023  T

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Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 12804725 - 12804550
Alignment:
Q  53 tgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaat 152  Q
    |||||||| ||  |||||||||| ||| |||||||||| |||||||| || || || ||||||||||| || | |  |||||| |||||||||||||| |    
T  12804725 tgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaagcacttttctagaaagcatggtgagaaaaagt 12804626  T
Q  153 ggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactag 228  Q
    |||||||||| ||||| || ||||  ||||||||||| ||||||||||||||||| ||||| || |||||||||||    
T  12804625 ggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactag 12804550  T

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Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 236
Target Start/End: Complemental strand, 50789033 - 50788850
Alignment:
Q  53 tgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaat 152  Q
    ||||| |||||  |||| ||||||||| |||||||||| || ||||| || || || || ||||||||||| ||   | | |||||||||||||| ||||    
T  50789033 tgtcctgagcccacatgcgttcatcatgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtgagaagaaat 50788934  T
Q  153 ggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactagagaatata 236  Q
    |||| |||||||||||||| ||||  ||||||||||| ||||||||||| || || ||||| || ||||| || ||||||||||    
T  50788933 ggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatata 50788850  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 42287057 - 42287212
Alignment:
Q  81 acccttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatcta 180  Q
    |||||||||||||| | |||||||| || |||||||| || ||||    | | || || |||||||| || ||||||||||| || ||||||||||  ||    
T  42287057 acccttcaagagctttaggagatctaactggaattaaaaagcatttctctcgtaagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaata 42287156  T
Q  181 tgctgttcattctgattggaaagctcactctaaaacctgtggtactagagaatata 236  Q
    ||||||||| ||||| |||||||| || ||||| || |||||||||||||||||||    
T  42287157 tgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatata 42287212  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 28496354 - 28496139
Alignment:
Q  19 caacaaagatgttattaaaaagagagcttatgtttgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttacaggaattaag 118  Q
    ||||||||||||||| || |||| || |||  | |||||||||    | ||||| || ||| ||||||||||||| ||||| || || ||||| || ||     
T  28496354 caacaaagatgttatcaagaagaaagtttacatctgtccagagaagacctgtgtccaccatgacccttcaagagcacttggtgacctcacaggtataaaa 28496255  T
Q  119 aaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacct 218  Q
    || || | ||||||||| || |||||||| || ||||||||||| || || || || |  ||||| || || |||||||||||||||||  | ||||| |    
T  28496254 aagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacat 28496155  T
Q  219 gtggtactagagaata 234  Q
    ||||||| ||||||||    
T  28496154 gtggtacaagagaata 28496139  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 4160283 - 4160356
Alignment:
Q  47 tatgtttgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttacaggaattaagaa 120  Q
    |||||||||||||||||  |||||||||| ||| |||||||||| || ||||| || || || ||||| |||||    
T  4160283 tatgtttgtccagagccaacatgtgttcaccatgacccttcaagggcacttggtgacctaactggaatcaagaa 4160356  T

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Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 110 - 237
Target Start/End: Original strand, 40749359 - 40749486
Alignment:
Q  110 ggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcact 209  Q
    ||||| |||||||||| ||||||||||||||| ||||| |||||||| ||||||||||| || ||||  ||||| || || ||||||||||||||||||     
T  40749359 ggaataaagaaacattttagtagaaaacatggcgagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcaca 40749458  T
Q  210 ctaaaacctgtggtactagagaatataa 237  Q
    ||||||| ||||||||||||||||||||    
T  40749459 ctaaaacttgtggtactagagaatataa 40749486  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 44150963 - 44150833
Alignment:
Q  104 cttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaag 203  Q
    ||||| ||||| || ||||||| |||  | |||||||||||||| |||||||||||||| |||||||| || |  ||||||||||| || |||||||| |    
T  44150963 cttactggaatcaaaaaacattttagccgcaaacatggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaagg 44150864  T
Q  204 ctcactctaaaacctgtggtactagagaata 234  Q
    |||||   ||||| ||||||||||| |||||    
T  44150863 ctcaccagaaaacttgtggtactagggaata 44150833  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 22085690 - 22085566
Alignment:
Q  83 ccttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatg 182  Q
    ||||| |||||| | |||||| | |||||||| |||||||||||||||||||||||||||||||| || ||||| ||||| ||||| || ||||  ||||    
T  22085690 ccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatg 22085591  T
Q  183 ctgttcattctgattggaaagctca 207  Q
    | ||||| |||||||||||||||||    
T  22085590 cagttcaatctgattggaaagctca 22085566  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 234
Target Start/End: Complemental strand, 30518286 - 30518181
Alignment:
Q  129 gtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactag 228  Q
    ||||||| |||||||| || || ||||| ||||| |||||||||||    ||||||||||| || ||||||||||||||||| ||||| |||||||||||    
T  30518286 gtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactag 30518187  T
Q  229 agaata 234  Q
    ||||||    
T  30518186 agaata 30518181  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 33186640 - 33186831
Alignment:
Q  46 ttatgtttgtccagagccttcatgtgttcatcataacccttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgag 145  Q
    |||||||||||| || ||| | |||||||||||| | ||||| |||||| | || ||| | || || || || || || | | |||||||||||||||||    
T  33186640 ttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggtgag 33186739  T
Q  146 aaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactagagaatataa 237  Q
    ||||| ||||||||||| || || || ||||  ||||||||||| ||||||||||||||||||||||||   |||||| ||||||| |||||    
T  33186740 aaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataa 33186831  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 5788859 - 5788754
Alignment:
Q  131 agaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactagag 230  Q
    ||||| ||||||||||| || ||||||||||| ||||| |||||||  ||||||||||| ||||||||||||||||| || ||||| ||||| |||||||    
T  5788859 agaaagcatggtgagaagaagtggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagag 5788760  T
Q  231 aatata 236  Q
    ||||||    
T  5788759 aatata 5788754  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 234
Target Start/End: Complemental strand, 38896058 - 38895890
Alignment:
Q  66 catgtgttcatcataacccttcaagagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataa 165  Q
    ||||||||||| || | |||||||| ||| | |||||| | || || || ||||| || | | |||| ||||| |||||||| || ||||| ||||| ||    
T  38896058 catgtgttcataatcatccttcaagggctttgggagatttaactgggataaagaagcacttttgtaggaaacacggtgagaagaagtggaagtgtgagaa 38895959  T
Q  166 gtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactagagaata 234  Q
    |||||||||  | ||||||||||| || ||||||||||| ||||| || || |||||||||||||||||    
T  38895958 gtgctcaaaattttatgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaata 38895890  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 42898288 - 42898391
Alignment:
Q  131 agaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactagag 230  Q
    ||||| || |||||||| || ||||||||||| |||||||| ||||  ||||| ||||| || || |||||||||||||| ||||||||||| || ||||    
T  42898288 agaaagcacggtgagaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctcactccaaaacctgtggcacaagag 42898387  T
Q  231 aata 234  Q
    ||||    
T  42898388 aata 42898391  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 40040737 - 40040855
Alignment:
Q  89 agagctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttc 188  Q
    |||||||| ||||| || ||||| || || || || | ||||||||| || |||||||| || ||||| ||||||||||| || ||||  ||||| ||||    
T  40040737 agagctctaggagacctgacagggataaaaaagcactttagtagaaagcacggtgagaagaagtggaagtgtgataagtgttctaagaaatatgcagttc 40040836  T
Q  189 attctgattggaaagctca 207  Q
    | ||||||||||| |||||    
T  40040837 aatctgattggaaggctca 40040855  T

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