View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9628_low_50 (Length: 220)

Name: NF9628_low_50
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9628_low_50
NF9628_low_50
[»] chr7 (5 HSPs)
chr7 (26-204)||(43009687-43009865)
chr7 (126-204)||(43009284-43009362)
chr7 (123-195)||(17198925-17198997)
chr7 (126-195)||(6056766-6056835)
chr7 (138-195)||(46867989-46868046)
[»] chr8 (2 HSPs)
chr8 (58-125)||(18217470-18217537)
chr8 (92-125)||(18297803-18297836)
[»] chr5 (1 HSPs)
chr5 (126-204)||(15459235-15459313)
[»] chr1 (2 HSPs)
chr1 (120-195)||(43870336-43870411)
chr1 (127-195)||(43868615-43868683)
[»] chr4 (3 HSPs)
chr4 (125-195)||(50131161-50131231)
chr4 (142-195)||(50133120-50133173)
chr4 (136-204)||(9590311-9590379)
[»] chr3 (6 HSPs)
chr3 (126-195)||(5127469-5127538)
chr3 (126-195)||(54094185-54094254)
chr3 (126-195)||(5125801-5125870)
chr3 (137-204)||(5133007-5133074)
chr3 (125-193)||(41625375-41625443)
chr3 (138-195)||(5134724-5134781)
[»] chr2 (5 HSPs)
chr2 (126-195)||(59837-59906)
chr2 (124-195)||(13999805-13999876)
chr2 (126-195)||(25757381-25757450)
chr2 (126-195)||(14001514-14001583)
chr2 (126-195)||(4417012-4417081)
[»] chr6 (1 HSPs)
chr6 (125-195)||(25170296-25170366)
[»] scaffold0204 (1 HSPs)
scaffold0204 (126-195)||(28341-28410)
[»] scaffold0092 (1 HSPs)
scaffold0092 (126-195)||(34599-34668)


Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 43009865 - 43009687
Alignment:
Q  26 ggtttaaggaatgagcatttttccataatgcctggattgaaatcatgttcaaataattttctatttctagaagttgatattaagatgcaagtggtttaaa 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43009865 ggtttaaggaatgagcatttttccataatgcctggattgaaatcatgttcaaataattttctatttctagaagttgatattaagatgcaagtggtttaaa 43009766  T
Q  126 gagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatggctattttg 204  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43009765 gagtgaatagttaaatttgtccttgaatttgcacgaatcagataaaaacgtccctcaatttatcgaaatggctattttg 43009687  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 204
Target Start/End: Original strand, 43009284 - 43009362
Alignment:
Q  126 gagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatggctattttg 204  Q
    ||||||||||| |||||| |||||||||||| |  ||||||| |||||||||||||||||||||||||| |||||||||    
T  43009284 gagtgaatagttaaatttatccttgaatttgtatgaatcagacaaaaacgtccctcaatttatcgaaatagctattttg 43009362  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 17198925 - 17198997
Alignment:
Q  123 aaagagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    |||||||||||| |||| || |||| ||||||||||| ||||  | ||||||||||| |||||||||||||||    
T  17198925 aaagagtgaatattcaatttcgtccctgaatttgcacgaatcgaacaaaaacgtcccccaatttatcgaaatg 17198997  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 6056766 - 6056835
Alignment:
Q  126 gagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    |||||||||  |||||| |||| ||||||||||| |||| || ||||||||||  |||||||||||||||    
T  6056766 gagtgaatacccaaattcgtccctgaatttgcacgaatcggacaaaaacgtcctccaatttatcgaaatg 6056835  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 46868046 - 46867989
Alignment:
Q  138 aaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    |||||||||| ||||||||||| |||| || ||||||||||  |||||||||||||||    
T  46868046 aaatttgtccctgaatttgcacgaatcggacaaaaacgtcctccaatttatcgaaatg 46867989  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 18217537 - 18217470
Alignment:
Q  58 tggattgaaatcatgttcaaataattttctatttctagaagttgatattaagatgcaagtggtttaaa 125  Q
    ||||||||||||||| || |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  18217537 tggattgaaatcatgatctaataatttgctaattctagaagttgatattaagatgcaagtggtttaaa 18217470  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 18297836 - 18297803
Alignment:
Q  92 ctagaagttgatattaagatgcaagtggtttaaa 125  Q
    ||||||||||||||||||||||| ||||||||||    
T  18297836 ctagaagttgatattaagatgcaggtggtttaaa 18297803  T

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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 15459313 - 15459235
Alignment:
Q  126 gagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatggctattttg 204  Q
    ||||||||||||||||| |||||||||||||||   ||| || |||| |||||| ||||||||||||||||||||||||    
T  15459313 gagtgaatagtcaaattcgtccttgaatttgcaaggatcggacaaaatcgtcccccaatttatcgaaatggctattttg 15459235  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 43870411 - 43870336
Alignment:
Q  120 tttaaagagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    ||||| |||||||||  |||||| ||| |||||||||||| |||| ||||||||||||| ||||||||||||||||    
T  43870411 tttaaggagtgaatacccaaattcgtcattgaatttgcacgaatcggataaaaacgtccttcaatttatcgaaatg 43870336  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 43868615 - 43868683
Alignment:
Q  127 agtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    ||||||||  |||||| |||| ||||||||||| |||| |||||||||||||   ||||||||||||||    
T  43868615 agtgaatacccaaattagtccctgaatttgcacgaatcggataaaaacgtcctctaatttatcgaaatg 43868683  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 50131161 - 50131231
Alignment:
Q  125 agagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    ||||||||||  ||||||||||| ||||||||||| |||| || ||||||||||| |||||||||||||||    
T  50131161 agagtgaatacccaaatttgtccctgaatttgcacgaatcggacaaaaacgtcccccaatttatcgaaatg 50131231  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 50133173 - 50133120
Alignment:
Q  142 ttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    |||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||    
T  50133173 ttgtccttgaatttgcacgaattagacaaaaacgtcccccaatttatcgaaatg 50133120  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 9590311 - 9590379
Alignment:
Q  136 tcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatggctattttg 204  Q
    ||||||| || ||||||||||||| |||| || |||||  |||  ||||||||||||||||||||||||    
T  9590311 tcaaattcgttcttgaatttgcacgaatcggacaaaaatatcctccaatttatcgaaatggctattttg 9590379  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 5127538 - 5127469
Alignment:
Q  126 gagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    |||||||||  |||||| ||||||||||||||||||||| || ||||||||||  |||||||||||||||    
T  5127538 gagtgaatacccaaattcgtccttgaatttgcacaaatcggacaaaaacgtcctccaatttatcgaaatg 5127469  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 54094254 - 54094185
Alignment:
Q  126 gagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    ||||||||| |||||||  ||||||||||||||||||||||| |||||| ||  ||||||||||||||||    
T  54094254 gagtgaatactcaaattcatccttgaatttgcacaaatcagacaaaaacatctttcaatttatcgaaatg 54094185  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 5125801 - 5125870
Alignment:
Q  126 gagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    |||||||||  |||||| |||||||||||||||| |||| || ||||||||||  |||||||||||||||    
T  5125801 gagtgaatacccaaattagtccttgaatttgcacgaatcggacaaaaacgtcctccaatttatcgaaatg 5125870  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 5133007 - 5133074
Alignment:
Q  137 caaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatggctattttg 204  Q
    |||||| |||||||||||||||| |||| || ||||||||||  |||||||||||||||  |||||||    
T  5133007 caaattagtccttgaatttgcacgaatcggacaaaaacgtcctccaatttatcgaaatgcatattttg 5133074  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 41625443 - 41625375
Alignment:
Q  125 agagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaa 193  Q
    ||||||||||  |||||| |||| ||||||||||| |||| || ||||| ||||| |||||||||||||    
T  41625443 agagtgaatatccaaattcgtccctgaatttgcacgaatcggacaaaaatgtcccccaatttatcgaaa 41625375  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 5134781 - 5134724
Alignment:
Q  138 aaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    ||||| |||||||||||||||| |||| || |||||| |||  |||||||||||||||    
T  5134781 aaattcgtccttgaatttgcacgaatcggacaaaaacatcctccaatttatcgaaatg 5134724  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 59837 - 59906
Alignment:
Q  126 gagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    |||||||||  ||||||||||| ||||||||||| ||||||| |||||| |||||||||| |||||||||    
T  59837 gagtgaatacccaaatttgtccctgaatttgcacgaatcagacaaaaacatccctcaattcatcgaaatg 59906  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 13999805 - 13999876
Alignment:
Q  124 aagagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    |||||||||||  |||||| |||||||||||||||| ||||||||||||| |||  | ||||||||||||||    
T  13999805 aagagtgaatatacaaattcgtccttgaatttgcacgaatcagataaaaatgtcttttaatttatcgaaatg 13999876  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 25757381 - 25757450
Alignment:
Q  126 gagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    |||||||||  |||||| |||| ||||||||||| ||||||| ||||| ||||| |||||||||||||||    
T  25757381 gagtgaatacccaaattcgtccctgaatttgcacgaatcagacaaaaatgtcccccaatttatcgaaatg 25757450  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 14001583 - 14001514
Alignment:
Q  126 gagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    |||||||||  |||||  |||| ||||||||||  ||||||| ||||||||||| |||||||||||||||    
T  14001583 gagtgaatacccaaatccgtccatgaatttgcatgaatcagacaaaaacgtcccccaatttatcgaaatg 14001514  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 4417081 - 4417012
Alignment:
Q  126 gagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    |||||||||  ||||||||||| ||||||| ||| ||||  | ||||||||||| ||||| |||||||||    
T  4417081 gagtgaatacccaaatttgtccctgaattttcacgaatcgaacaaaaacgtcccccaattcatcgaaatg 4417012  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 25170296 - 25170366
Alignment:
Q  125 agagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    ||||||||||  |||||| |||| ||||||||||| ||||  | |||||||||||| |||| |||||||||    
T  25170296 agagtgaatacccaaattcgtccctgaatttgcacgaatcgaacaaaaacgtcccttaattcatcgaaatg 25170366  T

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Target: scaffold0204 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 28341 - 28410
Alignment:
Q  126 gagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    ||||||||| ||||||| ||||||| |||| ||| ||||  | ||||||||||| ||||| |||||||||    
T  28341 gagtgaatactcaaattcgtccttggattttcacgaatcgaacaaaaacgtcccccaattaatcgaaatg 28410  T

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Target: scaffold0092 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 34599 - 34668
Alignment:
Q  126 gagtgaatagtcaaatttgtccttgaatttgcacaaatcagataaaaacgtccctcaatttatcgaaatg 195  Q
    |||||||||  |||||| ||||||| |||||||| |||| |  |||||||||||| ||||| ||||||||    
T  34599 gagtgaataaccaaattcgtccttggatttgcacgaatcggtcaaaaacgtcccttaatttgtcgaaatg 34668  T

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