View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9628_low_6 (Length: 539)

Name: NF9628_low_6
Description: NF9628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9628_low_6
NF9628_low_6
[»] chr1 (3 HSPs)
chr1 (137-374)||(15156700-15156938)
chr1 (15-114)||(19913568-19913667)
chr1 (137-204)||(20513289-20513356)
[»] chr8 (5 HSPs)
chr8 (133-374)||(25555600-25555833)
chr8 (136-204)||(1175-1243)
chr8 (136-204)||(14674730-14674798)
chr8 (138-204)||(20133320-20133386)
chr8 (301-374)||(25549303-25549376)
[»] chr3 (3 HSPs)
chr3 (133-374)||(20010996-20011229)
chr3 (15-114)||(10776632-10776731)
chr3 (136-204)||(33483305-33483373)
[»] chr6 (1 HSPs)
chr6 (133-374)||(22621109-22621342)
[»] chr7 (3 HSPs)
chr7 (203-369)||(19808513-19808677)
chr7 (399-510)||(19808684-19808795)
chr7 (138-204)||(44358685-44358751)
[»] chr5 (1 HSPs)
chr5 (15-114)||(40572062-40572161)
[»] scaffold0130 (1 HSPs)
scaffold0130 (15-114)||(18761-18860)
[»] scaffold0076 (1 HSPs)
scaffold0076 (136-204)||(48009-48077)
[»] scaffold0013 (1 HSPs)
scaffold0013 (136-204)||(134884-134952)
[»] chr2 (1 HSPs)
chr2 (146-204)||(23695014-23695072)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 137 - 374
Target Start/End: Original strand, 15156700 - 15156938
Alignment:
Q  137 ctgatactagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctgaaatcacacaaaaatattgacagtacacactt 236  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||     
T  15156700 ctgatacgagatggcttcaagggagctgactttgtagaaatcgccatgttgtgttatcgtaccgcctgaaatcacacagaaatattcacagtacacactc 15156799  T
Q  237 acaaggtttcaaaagccttgtgtctctccttttctaatgaaccacacaataattctaagataactattaaatatgacttttctttatttatataacagaa 336  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  15156800 acaaggtttcaagagccttgtgtctctcctttcctaatgaaccacacaataattctaagataactattaagtctgacttttctttatttatataacagaa 15156899  T
Q  337 tacacacattc-tagaaaataactgcacacaatataatt 374  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  15156900 tacacacattcttagaaaataacagcacacaatataatt 15156938  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 19913568 - 19913667
Alignment:
Q  15 agtatcaatagcctcgtgattggacaaatcgatcgtcgaagctggattggtattcgccagaattgttcgccaaagctggtttggtttcgccggctacttt 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19913568 agtatcaatagcctcgtgattggacaaattgatcgtcgaagctggattggtattcgccagaattgttcgccaaagctggtttggtttcgccggctacttt 19913667  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 20513356 - 20513289
Alignment:
Q  137 ctgatactagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctg 204  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20513356 ctgatacgagatggcttcaagggagctgattttgtagaaatcgccatgctgtgttatcgtaccgcctg 20513289  T

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Target: chr8 (Bit Score: 145; Significance: 5e-76; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 133 - 374
Target Start/End: Complemental strand, 25555833 - 25555600
Alignment:
Q  133 tttcctgatactagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctgaaatcacacaaaaatattgacagtacac 232  Q
    ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||    
T  25555833 tttcctgatacgagaaggcttcaagagagctgactttgtagaaatcgccatgttgtgctatcgtaccgcctgaaatcacacagaaatattcacagtacac 25555734  T
Q  233 acttacaaggtttcaaaagccttgtgtctctccttttctaatgaaccacacaataattctaagataactattaaatatgacttttctttatttatataac 332  Q
    ||| |||||||||||| | ||||||||||||||||| ||||||| ||||||||| |||||        |||||| | |||||||||||||||||||||||    
T  25555733 actcacaaggtttcaagatccttgtgtctctcctttcctaatgagccacacaatgattct--------tattaagtctgacttttctttatttatataac 25555642  T
Q  333 agaatacacacattctagaaaataactgcacacaatataatt 374  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  25555641 agaatacacacattctataaaataacagcacacaatataatt 25555600  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 1175 - 1243
Alignment:
Q  136 cctgatactagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctg 204  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1175 cctgatacgagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctg 1243  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 14674798 - 14674730
Alignment:
Q  136 cctgatactagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctg 204  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14674798 cctgatacgagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctg 14674730  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 20133320 - 20133386
Alignment:
Q  138 tgatactagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctg 204  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20133320 tgatacgagatggcttcaagggagctaattttgtagaaatcgccatgttgtgttatcgtaccgcctg 20133386  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 25549376 - 25549303
Alignment:
Q  301 tattaaatatgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaatataatt 374  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  25549376 tattaagtctgacttttctttatttatataacagaatacacacattctataaaataacagcacacaatataatt 25549303  T

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Target: chr3 (Bit Score: 145; Significance: 5e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 133 - 374
Target Start/End: Original strand, 20010996 - 20011229
Alignment:
Q  133 tttcctgatactagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctgaaatcacacaaaaatattgacagtacac 232  Q
    ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||    
T  20010996 tttcctgatacgagaaggcttcaagagagctgactttgtagaaatcgccatgttgtgctatcgtaccgcctgaaatcacacagaaatattcacagtacac 20011095  T
Q  233 acttacaaggtttcaaaagccttgtgtctctccttttctaatgaaccacacaataattctaagataactattaaatatgacttttctttatttatataac 332  Q
    ||| |||||||||||| |||||||||||| |||||| ||||||| ||||||||| |||||        |||||| | |||||||||||||||||||||||    
T  20011096 actcacaaggtttcaagagccttgtgtctttcctttcctaatgagccacacaatgattct--------tattaagtctgacttttctttatttatataac 20011187  T
Q  333 agaatacacacattctagaaaataactgcacacaatataatt 374  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  20011188 agaatacacacattctataaaataacagcacacaatataatt 20011229  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 10776632 - 10776731
Alignment:
Q  15 agtatcaatagcctcgtgattggacaaatcgatcgtcgaagctggattggtattcgccagaattgttcgccaaagctggtttggtttcgccggctacttt 114  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  10776632 agtatcaatagcctcgtgattggacaaattgatcttcgaagctggattgatattcgctagaattgctcgccaaagctggtttggtttcgccggctacttt 10776731  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 33483305 - 33483373
Alignment:
Q  136 cctgatactagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctg 204  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  33483305 cctgatacaagatggcttcaagggagctaattttgtagaaatcgccatgttgtgttatcgtacagcctg 33483373  T

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Target: chr6 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 133 - 374
Target Start/End: Original strand, 22621109 - 22621342
Alignment:
Q  133 tttcctgatactagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctgaaatcacacaaaaatattgacagtacac 232  Q
    ||||||||||| ||| ||||||||| ||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||| ||||||| ||||||||     
T  22621109 tttcctgatacgagaaggcttcaagagagctgactttgtagaaaccgccatgctgtgctatcgtaccgcctgaaatcacacagaaatattcacagtacat 22621208  T
Q  233 acttacaaggtttcaaaagccttgtgtctctccttttctaatgaaccacacaataattctaagataactattaaatatgacttttctttatttatataac 332  Q
    ||| |||||||||||| | ||||||||||||||||| ||||||| ||||||||| |||||        |||||| | |||||||||||||||||||||||    
T  22621209 actcacaaggtttcaagaaccttgtgtctctcctttcctaatgagccacacaatgattct--------tattaagtctgacttttctttatttatataac 22621300  T
Q  333 agaatacacacattctagaaaataactgcacacaatataatt 374  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  22621301 agaatacacacattctataaaataacagcacacaatataatt 22621342  T

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Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 203 - 369
Target Start/End: Complemental strand, 19808677 - 19808513
Alignment:
Q  203 tgaaatcacacaaaaatattgacagtacacacttacaaggtttcaaaagccttgtgtctctccttttctaatgaaccacacaataattctaagataacta 302  Q
    |||||| ||||| ||||||| |||||||||||| |||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19808677 tgaaattacacagaaatattcacagtacacactcacaaggttccgagagccttgtgtctctccttttccaatgaaccacacaataattctaagataacta 19808578  T
Q  303 ttaaatatgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaata 369  Q
    |||| | ||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  19808577 ttaagtctgactattctttatttatataacagaata--cacattctagaaaataactgcacacaata 19808513  T

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Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 399 - 510
Target Start/End: Original strand, 19808684 - 19808795
Alignment:
Q  399 tacaagtctgtgattgtatatttatctctgattagggaacctttccccagagaatattcaataataaacaataatattcagtcatttatcctattggtat 498  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||     
T  19808684 tacaagtgtgtgattgtatatttatctctgattaggaaacctttccccagagaatattcaataataaacaataatattcagttgtttatcctattggtac 19808783  T
Q  499 cagtttctatca 510  Q
    ||||||||||||    
T  19808784 cagtttctatca 19808795  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 44358751 - 44358685
Alignment:
Q  138 tgatactagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctg 204  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44358751 tgatacgagatggcttcaagggagctaattttgtagaaatcgccatgttgtgttatcgtaccgcctg 44358685  T

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Target: chr5 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 40572062 - 40572161
Alignment:
Q  15 agtatcaatagcctcgtgattggacaaatcgatcgtcgaagctggattggtattcgccagaattgttcgccaaagctggtttggtttcgccggctacttt 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40572062 agtatcaatagcctcgtgattggacaaattgatcgtcgaagctggattggtattcgccagaattgttcgccaaagctggtttggtttcgccggctacttt 40572161  T

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Target: scaffold0130 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 18761 - 18860
Alignment:
Q  15 agtatcaatagcctcgtgattggacaaatcgatcgtcgaagctggattggtattcgccagaattgttcgccaaagctggtttggtttcgccggctacttt 114  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18761 agtatcaatagcctcgtgtttggacaaatcgatcatcgaagctggattggtattcgccagaattgttcgccaaagttggtttggtttcgccggctacttt 18860  T

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Target: scaffold0076 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 48077 - 48009
Alignment:
Q  136 cctgatactagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctg 204  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48077 cctgatacgagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttaccgtaccgcctg 48009  T

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Target: scaffold0013 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 134884 - 134952
Alignment:
Q  136 cctgatactagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctg 204  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  134884 cctgatacgagatggcttcaagggagctgattttgtagaaatcgccatgttgtgttattgtaccgcctg 134952  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 23695072 - 23695014
Alignment:
Q  146 gatggcttcaagggagctgattttgtagaaatcgccatgttgtgttatcgtaccgcctg 204  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23695072 gatggcttcaagggagctgattttgtagaaatcgccatgctgtgttatcgtaccgcctg 23695014  T

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