View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9629_low_1 (Length: 571)
Name: NF9629_low_1
Description: NF9629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9629_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 63 - 357
Target Start/End: Complemental strand, 18221013 - 18220719
Alignment:
| Q |
63 |
aaggtagctccttttgaggtacagagggtgactcgtcaatgcaacaaaaatcaacaaggtgtaagtagtagcagcgtggccaaaaagtctaagaaaaatc |
162 |
Q |
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| T |
18221013 |
aaggtagctccttttgaggtacagagggtgactcgtcaatgcaacaaaaatcaacaaggtgtaagtagtagcagcgtggccaaaaagtctaagaaaaatc |
18220914 |
T |
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| Q |
163 |
accaaggtgtgagtagtggcagtggggataaaaagtctgagaaagcagtgaatgacaccaagaatcaggaacttgtggtttatagaagaaacaagccaaa |
262 |
Q |
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| T |
18220913 |
accaaggtgtgagtagtggcagtggggataaaaagtctgagaaagcagtgaatgacaccaagaagcaggaacttgtggtttatagaagaaacaagccaaa |
18220814 |
T |
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| Q |
263 |
aatatggattgatagatgggctgctgataggtaaatggttatttgtattcaaagatgtaaccnnnnnnncagtacacagttcagttttccacttg |
357 |
Q |
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| T |
18220813 |
aatatggattgatagatgggctgctgagaggtaaatggttatttgtatttaaagatgtaacctttttttcagtacacagttcagttttccacttg |
18220719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 422 - 558
Target Start/End: Complemental strand, 18220654 - 18220518
Alignment:
| Q |
422 |
cttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagctg |
521 |
Q |
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| T |
18220654 |
cttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagctg |
18220555 |
T |
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| Q |
522 |
agatcagaagcacgaaagtatattggtgacacaggtt |
558 |
Q |
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| T |
18220554 |
agatcagaagcacgaaagtatattggtgacacaggtt |
18220518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 421 - 558
Target Start/End: Complemental strand, 43012431 - 43012294
Alignment:
| Q |
421 |
ccttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagct |
520 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43012431 |
ccttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagct |
43012332 |
T |
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| Q |
521 |
gagatcagaagcacgaaagtatattggtgacacaggtt |
558 |
Q |
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| T |
43012331 |
tagatcagaagcaagaaagtatattggtgacacaggtt |
43012294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 156 - 357
Target Start/End: Complemental strand, 43012695 - 43012495
Alignment:
| Q |
156 |
aaaaatcaccaaggtgtgagtagtggcagtggggataaaaagtctgagaaagcagtgaatgacaccaagaatcaggaacttgtggtttatagaagaaaca |
255 |
Q |
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|||||||| ||||||||||||||| |||| || | ||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |
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| T |
43012695 |
aaaaatcaacaaggtgtgagtagtagcagcggagccaaaaaatctaagaaagcagtgaatgacaccaagaagcaggaactcgtggtttatagcagaaaca |
43012596 |
T |
|
| Q |
256 |
agccaaaaatatggattgatagatgggctgctgataggtaaatggttatttgtattcaaagatgtaaccnnnnnnncagtacacagttcagttttccact |
355 |
Q |
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| T |
43012595 |
agccaaaactagggatttatagatgggctgctgagaggtaaatggttatttgtattcatagatgtaacc-ttttttcaatacacagttcagttttccact |
43012497 |
T |
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| Q |
356 |
tg |
357 |
Q |
| |
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|| |
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| T |
43012496 |
tg |
43012495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 43012745 - 43012645
Alignment:
| Q |
58 |
ctgtcaaggtagctccttttgaggtacagagggtgactcgtcaatgcaacaaaaatcaacaaggtgtaagtagtagcagcgtggccaaaaagtctaagaa |
157 |
Q |
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| T |
43012745 |
ctgtcaaggtagctcagtttgaggtacagaggacaactcgtcaatgcaacaaaaatcaacaaggtgtgagtagtagcagcggagccaaaaaatctaagaa |
43012646 |
T |
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| Q |
158 |
a |
158 |
Q |
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| T |
43012645 |
a |
43012645 |
T |
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