View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9629_low_14 (Length: 347)
Name: NF9629_low_14
Description: NF9629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9629_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 32104252 - 32104378
Alignment:
| Q |
1 |
ttcaaaacctgaactttaaaactcgtcaatatttatttactttgattttgcaaatacaagattaaaccagacaaacacaaataatgaagtggtgagtttc |
100 |
Q |
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| T |
32104252 |
ttcaaaacctgaactttaaaactcatcaatatttatttactttgattttgcaaatacaagattaaaccagacaaacacaaataatgaagtggtgagtttc |
32104351 |
T |
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| Q |
101 |
aaaagcataaaataatatactctagta |
127 |
Q |
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| T |
32104352 |
aaaagcataaaataatatactctagta |
32104378 |
T |
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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 233 - 319
Target Start/End: Original strand, 32104404 - 32104490
Alignment:
| Q |
233 |
tatagggcaagtttttcattaataatcctaaaagtgacatgatgttaattaacagcgtgggcaaggctagtccaaggatatatatat |
319 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
32104404 |
tatagggcaagtgtttcattaataatcctaaaagtgacatgatgttaactaactgcgtgggcaaggctagtccaaggatatatatat |
32104490 |
T |
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