View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9629_low_15 (Length: 290)

Name: NF9629_low_15
Description: NF9629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9629_low_15
NF9629_low_15
[»] chr6 (4 HSPs)
chr6 (5-87)||(32670264-32670346)
chr6 (145-220)||(32670131-32670206)
chr6 (210-268)||(32669935-32669993)
chr6 (146-240)||(22053560-22053654)
[»] chr5 (13 HSPs)
chr5 (14-87)||(11494905-11494978)
chr5 (6-75)||(7119207-7119275)
chr5 (14-75)||(11502020-11502081)
chr5 (14-75)||(11509416-11509477)
chr5 (14-75)||(11516789-11516850)
chr5 (14-75)||(11524191-11524252)
chr5 (14-75)||(11531602-11531663)
chr5 (14-75)||(11562554-11562615)
chr5 (1-75)||(15408568-15408643)
chr5 (14-87)||(11539060-11539133)
chr5 (15-75)||(321921-321981)
chr5 (15-75)||(34445076-34445136)
chr5 (32-75)||(14023352-14023395)
[»] chr3 (4 HSPs)
chr3 (6-75)||(34073086-34073155)
chr3 (7-73)||(55160066-55160132)
chr3 (6-75)||(36961152-36961220)
chr3 (1-42)||(21698577-21698618)
[»] chr8 (8 HSPs)
chr8 (5-75)||(24476614-24476684)
chr8 (1-75)||(17707915-17707988)
chr8 (4-71)||(14222361-14222428)
chr8 (11-75)||(44274203-44274267)
chr8 (20-75)||(6344106-6344161)
chr8 (1-37)||(9577148-9577184)
chr8 (6-86)||(16338629-16338709)
chr8 (7-71)||(36275594-36275658)
[»] chr4 (9 HSPs)
chr4 (1-75)||(52440567-52440641)
chr4 (18-75)||(34408337-34408394)
chr4 (32-75)||(31742633-31742676)
chr4 (29-75)||(7741200-7741246)
chr4 (8-70)||(8977703-8977765)
chr4 (6-75)||(42158853-42158920)
chr4 (6-75)||(8306188-8306257)
chr4 (6-47)||(41038829-41038870)
chr4 (6-74)||(21709744-21709812)
[»] chr7 (6 HSPs)
chr7 (7-75)||(38919559-38919627)
chr7 (6-75)||(1461306-1461375)
chr7 (6-67)||(44933507-44933568)
chr7 (31-75)||(11274441-11274485)
chr7 (28-76)||(38831817-38831865)
chr7 (18-75)||(18880412-18880468)
[»] chr1 (3 HSPs)
chr1 (6-75)||(5521967-5522036)
chr1 (9-75)||(52293850-52293918)
chr1 (32-75)||(26507036-26507079)
[»] chr2 (5 HSPs)
chr2 (146-240)||(44363945-44364039)
chr2 (17-75)||(28172974-28173032)
chr2 (5-75)||(33613687-33613758)
chr2 (32-75)||(41695129-41695172)
chr2 (31-75)||(38768805-38768849)
[»] scaffold0001 (1 HSPs)
scaffold0001 (24-76)||(197096-197148)


Alignment Details
Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 32670346 - 32670264
Alignment:
Q  5 tcttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaagggttctatttg 87  Q
    ||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32670346 tcttttaagaaactatttgaaacttaaaaacttagaaaacttcaaatagatgcattaaattaacaacttaagggttctatttg 32670264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 32670206 - 32670131
Alignment:
Q  145 atatttttctcaaacataaattaccaaaagagatatttagactataaagtttctgatgtagataagtatacgtgta 220  Q
    |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32670206 atatttctctaagacataaattaccaaaagagatatttagactataaagtttctgatgcagataagtatacgtgta 32670131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 32669993 - 32669935
Alignment:
Q  210 gtatacgtgtatatgagatgttacatttttgttctacatacacaactttttcctctaaa 268  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||    
T  32669993 gtatacgtgtacatgagatgttacatttttgtcctacatacacaacttttccctctaaa 32669935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 22053654 - 22053560
Alignment:
Q  146 tatttttctcaaacataaattaccaaaagagatatttagactataaagtttctgatgtagataagtatacgtgtatatgagatgttacatttttg 240  Q
    |||||||||||||| ||||| |||||||  |  | ||||| |||||| ||||||| |||||||||||||| | |  |||||||||||||||||||    
T  22053654 tatttttctcaaacttaaatgaccaaaaatgtgaattagagtataaaatttctgaggtagataagtatacctattcatgagatgttacatttttg 22053560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 11494978 - 11494905
Alignment:
Q  14 aacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaagggttctatttg 87  Q
    ||||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||| || ||||||||    
T  11494978 aacctatttgaaacttaaaaacttataaaacttcaaataggtgcattaaattaacaacttaaaggatctatttg 11494905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 7119275 - 7119207
Alignment:
Q  6 cttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||||| ||||||||||||||||||| |||||||||||||||| ||  ||||||||||||||||||||    
T  7119275 cttttaaggacctatttgaaatttaaaa-cttaaaaaacttcaaaaaggtgcattaaattaacaacttaa 7119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 11502081 - 11502020
Alignment:
Q  14 aacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    ||||||||||||| |||||||| || ||||||||||||||  ||||||||||||||||||||    
T  11502081 aacctatttgaaacttaaaaacgtataaaacttcaaataggtgcattaaattaacaacttaa 11502020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 11509477 - 11509416
Alignment:
Q  14 aacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    ||||||||||||| |||||||| || ||||||||||||||  ||||||||||||||||||||    
T  11509477 aacctatttgaaacttaaaaacgtataaaacttcaaataggtgcattaaattaacaacttaa 11509416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 11516850 - 11516789
Alignment:
Q  14 aacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    ||||||||||||| |||||||| || ||||||||||||||  ||||||||||||||||||||    
T  11516850 aacctatttgaaacttaaaaacgtataaaacttcaaataggtgcattaaattaacaacttaa 11516789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 11524252 - 11524191
Alignment:
Q  14 aacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    ||||||||||||| |||||||| || ||||||||||||||  ||||||||||||||||||||    
T  11524252 aacctatttgaaacttaaaaacgtataaaacttcaaataggtgcattaaattaacaacttaa 11524191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 11531663 - 11531602
Alignment:
Q  14 aacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    ||||||||||||| |||||||| || ||||||||||||||  ||||||||||||||||||||    
T  11531663 aacctatttgaaacttaaaaacgtataaaacttcaaataggtgcattaaattaacaacttaa 11531602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 11562615 - 11562554
Alignment:
Q  14 aacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    ||||||||||||| |||||||| || ||||||||||||||  ||||||||||||||||||||    
T  11562615 aacctatttgaaacttaaaaacgtataaaacttcaaataggtgcattaaattaacaacttaa 11562554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 15408568 - 15408643
Alignment:
Q  1 ttattcttttaagaacctatttgaaa-tttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||| ||||| || || ||||||||| |||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  15408568 ttatcctttttaggacttatttgaaactttagaaacctaaaaaacttcaaatagatgcattaaattaacaacttaa 15408643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 11539133 - 11539060
Alignment:
Q  14 aacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaagggttctatttg 87  Q
    |||||||||||||  ||||||| || ||||||||||||||  | |||||||||||||||||| || ||||||||    
T  11539133 aacctatttgaaacataaaaacatataaaacttcaaataggtgtattaaattaacaacttaaaggatctatttg 11539060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 321981 - 321921
Alignment:
Q  15 acctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||||||||  ||||||||||||||| ||||||||||  ||||| ||||||||||||||    
T  321981 acctatttgaagcttaaaaacttaaaaagcttcaaataggtgcattgaattaacaacttaa 321921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 34445076 - 34445136
Alignment:
Q  15 acctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||||||||| |||||||||| ||||||||||||||   ||||||||||| ||||||||    
T  34445076 acctatttgaaacttaaaaacttgaaaaacttcaaatatgtgcattaaattagcaacttaa 34445136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 14023352 - 14023395
Alignment:
Q  32 aaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    ||||||||||||||||||||| | |||||||||||| |||||||    
T  14023352 aaacttaaaaaacttcaaataaatgcattaaattaataacttaa 14023395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 34073155 - 34073086
Alignment:
Q  6 cttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||||| | |||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||    
T  34073155 cttttaaggatctatttgaaacttaaaaacttaaaaaacttcaaatagatacattaaattaacaacttaa 34073086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 55160066 - 55160132
Alignment:
Q  7 ttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaactt 73  Q
    |||||||||||||||||||| ||||||  || |||||||| ||||||| ||||||||||||||||||    
T  55160066 ttttaagaacctatttgaaacttaaaatttttaaaaactttaaatagatgcattaaattaacaactt 55160132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 36961152 - 36961220
Alignment:
Q  6 cttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||||| ||||||| ||||  |||||||||||||||||||||||||  || |||||||||||||||||    
T  36961152 cttttaaggacctatt-gaaacataaaaacttaaaaaacttcaaataggtgcgttaaattaacaacttaa 36961220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21698577 - 21698618
Alignment:
Q  1 ttattcttttaagaacctatttgaaatttaaaaacttaaaaa 42  Q
    |||| ||||||||||||||||||||| |||||||||||||||    
T  21698577 ttatccttttaagaacctatttgaaacttaaaaacttaaaaa 21698618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 24476614 - 24476684
Alignment:
Q  5 tcttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    ||||||||| || ||||||||| |||||||||||||||| |||||||||| |||||| |||||||||||||    
T  24476614 tcttttaaggacttatttgaaacttaaaaacttaaaaaaattcaaatagatgcattatattaacaacttaa 24476684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17707915 - 17707988
Alignment:
Q  1 ttattcttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||| |||||||| |||||||| ||||||||||| |||||| |||||||||||  ||||||||||||||||||||    
T  17707915 ttatccttttaaggacctatttaaaatttaaaaatttaaaa-acttcaaataggtgcattaaattaacaacttaa 17707988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 14222361 - 14222428
Alignment:
Q  4 ttcttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaac 71  Q
    |||||||||| || ||||| |||  ||| |||||||||||||||||||||| | ||||||||||||||    
T  14222361 ttcttttaagtacttatttaaaacataagaacttaaaaaacttcaaatagatgtattaaattaacaac 14222428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 44274267 - 44274203
Alignment:
Q  11 aagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    ||||| |||||| ||| ||||||| || |||||||||||||| | | ||||||||||||||||||    
T  44274267 aagaatctatttaaaacttaaaaattttaaaaacttcaaataaatgtattaaattaacaacttaa 44274203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 6344106 - 6344161
Alignment:
Q  20 tttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    ||||||| ||||||||||||||||||||| ||||  | ||||||||||||| ||||    
T  6344106 tttgaaacttaaaaacttaaaaaacttcatataggtgtattaaattaacaatttaa 6344161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9577148 - 9577184
Alignment:
Q  1 ttattcttttaagaacctatttgaaatttaaaaactt 37  Q
    |||| |||||||||||| |||||||||||||||||||    
T  9577148 ttatccttttaagaaccaatttgaaatttaaaaactt 9577184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 16338709 - 16338629
Alignment:
Q  6 cttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaagggttctattt 86  Q
    ||||| ||||||||||||||| |||||| || ||||| | |||||||   ||||||||||||| | |||| || |||||||    
T  16338709 ctttttagaacctatttgaaacttaaaagctcaaaaagcgtcaaatatgtgcattaaattaacgatttaaaggatctattt 16338629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 36275658 - 36275594
Alignment:
Q  7 ttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaac 71  Q
    ||||||| | |||||| ||||||||||| ||||| || || ||||| | ||||||||||||||||    
T  36275658 ttttaaggaactatttaaaatttaaaaagttaaagaatttaaaataaatgcattaaattaacaac 36275594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 52440641 - 52440567
Alignment:
Q  1 ttattcttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||| |||||||| |||||||||||| |||||||||||||||| || ||||||  ||||||||||||||||||||    
T  52440641 ttatccttttaaggacctatttgaaacttaaaaacttaaaaaaatttaaataggtgcattaaattaacaacttaa 52440567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 34408394 - 34408337
Alignment:
Q  18 tatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||| |||||||||||||||||||||||| ||||||  |||||| |||||||||||||    
T  34408394 tattagaaatttaaaaacttaaaaaacttaaaataggtgcattagattaacaacttaa 34408337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 31742676 - 31742633
Alignment:
Q  32 aaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||||||||||||||||| |  ||||||||||||||||||||    
T  31742676 aaacttaaaaaacttcaaattggtgcattaaattaacaacttaa 31742633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 7741200 - 7741246
Alignment:
Q  29 taaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||| || ||||||||||||||| |||||||||||||| ||||||    
T  7741200 taaaaattttaaaaacttcaaataggagcattaaattaacgacttaa 7741246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 8977765 - 8977703
Alignment:
Q  8 tttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaa 70  Q
    ||||||||||||||| ||| ||||||| | ||||| |||||||| || |||| ||||||||||    
T  8977765 tttaagaacctatttaaaaattaaaaattaaaaaagcttcaaatcgatgcatcaaattaacaa 8977703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 42158920 - 42158853
Alignment:
Q  6 cttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||||| ||| |||||||| |||||  ||||||||||||||||||   ||| ||||||||||||||||    
T  42158920 cttttaaggaccaatttgaaacttaaa--cttaaaaaacttcaaatatgtgcactaaattaacaacttaa 42158853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 8306188 - 8306257
Alignment:
Q  6 cttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||||  ||||| |||||| ||  ||||||||||||||| ||||||| | ||| ||||||||||||||    
T  8306188 cttttaaagacctaattgaaacttctaaacttaaaaaactttaaatagatgtatttaattaacaacttaa 8306257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 41038870 - 41038829
Alignment:
Q  6 cttttaagaacctatttgaaatttaaaaacttaaaaaacttc 47  Q
    |||||||| || ||||||||| ||||||||||||||||||||    
T  41038870 cttttaaggacttatttgaaacttaaaaacttaaaaaacttc 41038829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 21709744 - 21709812
Alignment:
Q  6 cttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaactta 74  Q
    |||||||| || ||||| |||  |||||||||||||||| |  |||||| ||||||||| |||||||||    
T  21709744 cttttaaggacatatttaaaacataaaaacttaaaaaacattgaatagatgcattaaatcaacaactta 21709812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 38919627 - 38919559
Alignment:
Q  7 ttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||||||||||||||||| ||||||| ||||||| ||| ||||| | ||||||||||||||||||||    
T  38919627 ttttaagaacctatttgaaacttaaaaatttaaaaatctttaaatatacgcattaaattaacaacttaa 38919559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 1461375 - 1461306
Alignment:
Q  6 cttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||||| |||||||| |||  |||||||||||||||| ||||||| |  |||||||||||||||||||    
T  1461375 cttttaaggacctatttaaaagctaaaaacttaaaaaacctcaaataaattcattaaattaacaacttaa 1461306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 44933568 - 44933507
Alignment:
Q  6 cttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaa 67  Q
    |||||||  |||||||| |||| |||||||||||||||||||||||| | ||||||||||||    
T  44933568 cttttaatgacctatttaaaatataaaaacttaaaaaacttcaaataaatgcattaaattaa 44933507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 11274441 - 11274485
Alignment:
Q  31 aaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||| ||||||||||| |||||| |||||||||||||||||||||    
T  11274441 aaaatttaaaaaacttaaaataggagcattaaattaacaacttaa 11274485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 38831817 - 38831865
Alignment:
Q  28 ttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaag 76  Q
    |||||||||||||||| |||||||||   ||||||||||||||||||||    
T  38831817 ttaaaaacttaaaaaaattcaaataggttcattaaattaacaacttaag 38831865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 18880468 - 18880412
Alignment:
Q  18 tatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    ||||| ||| |||||||||||||||| |||||||| | ||||||||||||||| ||||    
T  18880468 tattttaaaattaaaaacttaaaaaagttcaaata-atgcattaaattaacaatttaa 18880412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 5522036 - 5521967
Alignment:
Q  6 cttttaagaacctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||||   | ||||||||||||||||||    
T  5522036 cttttaaggacctatttgaaacttaaaaactttaaaaacttcaaataagtgtattaaattaacaacttaa 5521967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 52293918 - 52293850
Alignment:
Q  9 ttaagaacctatttgaaatttaaaaacttaa--aaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||  | ||||||||||||||||||    
T  52293918 ttaaggacctatttgaaatttaaaaacttaaaaaaaacttcaaataggtggattaaattaacaacttaa 52293850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 26507079 - 26507036
Alignment:
Q  32 aaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    ||||||||||||||||||||||| || |||||||||||||||||    
T  26507079 aaacttaaaaaacttcaaatagatgctttaaattaacaacttaa 26507036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 44364039 - 44363945
Alignment:
Q  146 tatttttctcaaacataaattaccaaaagagatatttagactataaagtttctgatgtagataagtatacgtgtatatgagatgttacatttttg 240  Q
    |||||||||||||| ||||| |||||||  |  | ||||| |||||| ||||||| |||||||||||||| | |  |||||||||||||||||||    
T  44364039 tatttttctcaaacttaaatgaccaaaaatgtgaattagagtataaaatttctgaggtagataagtatacctattcatgagatgttacatttttg 44363945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 28173032 - 28172974
Alignment:
Q  17 ctatttgaaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||||||| |||||||||||||  ||| |||||||  ||||||||||||||||||||    
T  28173032 ctatttgaaacttaaaaacttaaagcactacaaataggtgcattaaattaacaacttaa 28172974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 33613758 - 33613687
Alignment:
Q  5 tcttttaagaacctatttgaaatttaaaaacttaaaaaa-cttcaaatagaagcattaaattaacaacttaa 75  Q
    ||||||||  |||||||| ||| ||||| |||||||||| ||||||||||  | ||||||||||||||||||    
T  33613758 tcttttaatgacctatttaaaacttaaatacttaaaaaaacttcaaataggtgtattaaattaacaacttaa 33613687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 41695172 - 41695129
Alignment:
Q  32 aaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||| |||||||||||||||  ||||||||||||||||||||    
T  41695172 aaactttaaaaacttcaaataggtgcattaaattaacaacttaa 41695129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 38768849 - 38768805
Alignment:
Q  31 aaaacttaaaaaacttcaaatagaagcattaaattaacaacttaa 75  Q
    |||||||||||||||||||||| |  |||||||||||||| ||||    
T  38768849 aaaacttaaaaaacttcaaataaatacattaaattaacaaattaa 38768805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 197096 - 197148
Alignment:
Q  24 aaatttaaaaacttaaaaaacttcaaatagaagcattaaattaacaacttaag 76  Q
    |||||||||||||||||||||||||| ||   |||||||||||| || |||||    
T  197096 aaatttaaaaacttaaaaaacttcaactatgtgcattaaattaaaaatttaag 197148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University