View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9629_low_17 (Length: 252)

Name: NF9629_low_17
Description: NF9629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9629_low_17
NF9629_low_17
[»] chr5 (4 HSPs)
chr5 (1-235)||(7141496-7141730)
chr5 (1-235)||(7154266-7154500)
chr5 (10-223)||(7131784-7131997)
chr5 (4-92)||(41337787-41337875)
[»] chr6 (4 HSPs)
chr6 (21-100)||(12425274-12425353)
chr6 (23-100)||(12268332-12268409)
chr6 (183-235)||(12268200-12268252)
chr6 (183-227)||(12425433-12425477)
[»] chr4 (1 HSPs)
chr4 (21-235)||(55954947-55955158)
[»] chr8 (1 HSPs)
chr8 (58-101)||(23610307-23610350)
[»] chr2 (1 HSPs)
chr2 (55-100)||(41795747-41795792)
[»] chr3 (1 HSPs)
chr3 (2-98)||(22986311-22986407)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 7141730 - 7141496
Alignment:
Q  1 tttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7141730 tttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcattta 7141631  T
Q  101 taaagactgtagtattttttggtatatcatacccatctattttggttagttctgtgctcaatcttggaaccaacaaaggagaaggtgggtgtaacctcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141630 taaagactgtagtattttttggtatatcatacccatctattttggttagttctgtgctcaatcttggaaccaacaaaggagaaggtgggtgtaacctcaa 7141531  T
Q  201 tgtttctttgatcactaactttaagtaacttagtt 235  Q
    |||||||||||||||||||||||||||||||||||    
T  7141530 tgtttctttgatcactaactttaagtaacttagtt 7141496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 7154500 - 7154266
Alignment:
Q  1 tttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||  ||||||||| | | ||||||||||||||    
T  7154500 tttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaatattgtggatctcttgccactgcccatgcattta 7154401  T
Q  101 taaagactgtagtattttttggtatatcatacccatctattttggttagttctgtgctcaatcttggaaccaacaaaggagaaggtgggtgtaacctcaa 200  Q
    | |  ||| |||||||||||||||| ||||| ||||||||  |||| | ||| ||||    ||| || ||||| ||||| |||||||||||||||||||     
T  7154400 tcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagggaccaataaaggtgaaggtgggtgtaacctcat 7154301  T
Q  201 tgtttctttgatcactaactttaagtaacttagtt 235  Q
    ||||||||||||||||||||| |||||| ||||||    
T  7154300 tgtttctttgatcactaacttaaagtaagttagtt 7154266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 7131997 - 7131784
Alignment:
Q  10 aaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttataaagactg 109  Q
    ||||||||  ||||| | ||||| ||||||||| ||||| ||||||||||| ||||||||| |||||| ||| | || |||||| |||| || | ||||     
T  7131997 aaatcaatagaactaccttcaaatctctctggattaaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactt 7131898  T
Q  110 tagtattttttggtatatcatacccatctattttggttagttctgtgctcaatcttggaaccaacaaaggagaaggtgggtgtaacctcaatgtttcttt 209  Q
    |||| ||||||||||||||||| ||||| || ||||||| ||| ||||    ||| || |  || ||||||| ||||| ||||||||| || || |||||    
T  7131897 tagtcttttttggtatatcataaccatcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttt 7131798  T
Q  210 gatcactaacttta 223  Q
     |||||||| ||||    
T  7131797 tatcactaatttta 7131784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 41337875 - 41337787
Alignment:
Q  4 cctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgccca 92  Q
    ||||||||||||||  | |||| | |||||||||| ||  |||| |||||||| |||  |||||| || ||||||||||| ||||||||    
T  41337875 cctttgaaatcaattgagctattaacaaacctctcaggtttaaaactctcagcttcaacccaatactttggatctcttccaattgccca 41337787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 12425274 - 12425353
Alignment:
Q  21 actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 100  Q
    |||||||| ||||||||| || |||||| |||||||||||  ||||| ||  ||||||||||| ||||||||||||||||    
T  12425274 actatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccatgcattta 12425353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 12268409 - 12268332
Alignment:
Q  23 tatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 100  Q
    |||||| ||||||||| || |||||| |||| ||||||  |||||  || ||||||||||| ||||||||||||||||    
T  12268409 tatcatgaaacctctcaggtataaacttctctgcatcagaccaatgattgggatctcttccaattgcccatgcattta 12268332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 12268252 - 12268200
Alignment:
Q  183 aggtgggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtt 235  Q
    |||||||||||||||||  ||||||||||||||| |||| |||||||| ||||    
T  12268252 aggtgggtgtaacctcagggtttctttgatcactgacttcaagtaactaagtt 12268200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 12425433 - 12425477
Alignment:
Q  183 aggtgggtgtaacctcaatgtttctttgatcactaactttaagta 227  Q
    |||||||||||||||||  |||||||||||||||||||| |||||    
T  12425433 aggtgggtgtaacctcagggtttctttgatcactaacttcaagta 12425477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 55954947 - 55955158
Alignment:
Q  21 actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttataaagactgtagtatttttt 120  Q
    |||||||| |||||| || || |||||| |||  ||||||| ||||| ||| ||||||||||| ||||||||||||||||  |  ||  |||| ||| ||    
T  55954947 actatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcatttactatcacgctagtctttatt 55955046  T
Q  121 ggtatatcatacccatctattttggttagttctgtgctcaatcttggaaccaacaaaggagaaggtgggtgtaacctcaatgtttctttgatcactaact 220  Q
    ||||| ||||| |||||||| |||     |||  |||    |||||||   | ||||| | ||||||||||||||||||  ||||||||||||||| |||    
T  55955047 ggtatttcatatccatctatgttgcaagcttccctgcattctcttgga---agcaaagtaaaaggtgggtgtaacctcatggtttctttgatcactgact 55955143  T
Q  221 ttaagtaacttagtt 235  Q
    | |||||||| ||||    
T  55955144 tcaagtaactaagtt 55955158  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 23610307 - 23610350
Alignment:
Q  58 tcattccaatatttaggatctcttcctattgcccatgcatttat 101  Q
    |||||||||||||||||||| |||||||||||||| ||||||||    
T  23610307 tcattccaatatttaggatcccttcctattgcccaagcatttat 23610350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 41795747 - 41795792
Alignment:
Q  55 gcatcattccaatatttaggatctcttcctattgcccatgcattta 100  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||    
T  41795747 gcatcatatcaatatttgggatctcttccgattgcccatgcattta 41795792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 22986311 - 22986407
Alignment:
Q  2 ttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatt 98  Q
    ||||||||||||||||  ||||||||  ||||||||| |||  |||| | || |  |||||||||||||||||||| | ||| || ||||| |||||    
T  22986311 ttcctttgaaatcaatagaactatcaataaacctctcaggataaaacttatcggggtcattccaatatttaggatcccgtccaatggcccaagcatt 22986407  T

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