View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9629_low_18 (Length: 239)
Name: NF9629_low_18
Description: NF9629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9629_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2781886 - 2781667
Alignment:
| Q |
1 |
gattaatctttccacatatctgcaaactcatcaggctccagaggattggccatctcatgcattttcctccttgtctttgctttgatcttctttgcaaacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2781886 |
gattaatctttccacatatctgcaaactcatcaggctccagaggattggccatctcatgcattttcctccttgtctttgctttgatcttctttgcaaacg |
2781787 |
T |
|
| Q |
101 |
ttccagcctttttcttcttctgcaaagctcggatctacaacaacataaaaaggttaaaaacataacaaatatgtagttattttcaatagaaaattacaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2781786 |
ttccagcctttttcttcttctgcaaagctcggatctac---aacataaaaaggttaaaaacataacaaatatgtagttattttcaatagaaaattacaga |
2781690 |
T |
|
| Q |
201 |
aattacaagtgtacattgagaac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
2781689 |
aattacaagtgtacattgagaac |
2781667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25560563 - 25560784
Alignment:
| Q |
1 |
gattaatctttccacatatctgcaaactcatcaggctccagaggattggccatctcatgcattttcctccttgtctttgctttgatcttctttgcaaacg |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25560563 |
gattagtctttccacatatctgcaaactcatcaggctcaagaggattggccatctcatgcattttcctccttgtctttgctttgaccttctttgcaaacg |
25560662 |
T |
|
| Q |
101 |
ttccagcctttttcttcttctgcaaagctcggatctacaacaacataaaaaggttaaaaacataacaaatatgtagttattttcaatagaaaattacaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |
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| T |
25560663 |
ttccagcctttttcttcttctgcaaagctcggatctacaacaacataaaaaggttaaaaatataaccaatatgtagttattttcagtagaaaattacaga |
25560762 |
T |
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| Q |
201 |
aattacaagtgtacattgagaa |
222 |
Q |
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||||| |||||||||||||||| |
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| T |
25560763 |
aattataagtgtacattgagaa |
25560784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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