View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9629_low_20 (Length: 238)

Name: NF9629_low_20
Description: NF9629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9629_low_20
NF9629_low_20
[»] chr3 (2 HSPs)
chr3 (1-103)||(28424311-28424413)
chr3 (57-104)||(45807043-45807090)
[»] chr4 (2 HSPs)
chr4 (104-224)||(27316307-27316428)
chr4 (57-97)||(6509856-6509896)
[»] chr8 (1 HSPs)
chr8 (1-102)||(23388234-23388335)
[»] chr7 (2 HSPs)
chr7 (7-104)||(42840750-42840848)
chr7 (57-97)||(40740666-40740706)
[»] scaffold0380 (1 HSPs)
scaffold0380 (57-96)||(6112-6151)
[»] chr5 (1 HSPs)
chr5 (57-104)||(10021004-10021051)
[»] chr1 (4 HSPs)
chr1 (57-103)||(17050398-17050444)
chr1 (57-103)||(51606914-51606960)
chr1 (57-89)||(38688643-38688675)
chr1 (57-89)||(49420098-49420130)
[»] chr2 (1 HSPs)
chr2 (70-106)||(44094086-44094122)


Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28424413 - 28424311
Alignment:
Q  1 attattttttattatcaaaccaggtcatgactgccagctgcaggtaaagagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgcc 100  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28424413 attattttttattatcacaacaggtcatgactgccagctgcaggtaaaaagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgcc 28424314  T
Q  101 acc 103  Q
    |||    
T  28424313 acc 28424311  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 45807043 - 45807090
Alignment:
Q  57 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacct 104  Q
    ||||||||||| |||||||||||||||||||||  |||||| ||||||    
T  45807043 tttcccatcataggaaacaactttgctttcccattctaaaccccacct 45807090  T

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Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 27316428 - 27316307
Alignment:
Q  104 tatgtttaatcctatttatctttgatgatgtatttacttaccataagtaactaatattcttagataaggattgaatgatggtcctctgcat-aattgttt 202  Q
    |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  27316428 tatgtttaatcctatttatctttgatcatgtatttacatactataagtaactaatattcttagattaggattgaatgatgatcctctgcataaattgttt 27316329  T
Q  203 gcaacatgtgatcgtgatgtcc 224  Q
    ||||||||||||||||| ||||    
T  27316328 gcaacatgtgatcgtgaagtcc 27316307  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 6509856 - 6509896
Alignment:
Q  57 tttcccatcatgggaaacaactttgctttcccaggctaaac 97  Q
    ||||||||  |||||| ||||||||||||||||||||||||    
T  6509856 tttcccatgctgggaagcaactttgctttcccaggctaaac 6509896  T

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Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 23388335 - 23388234
Alignment:
Q  1 attattttttattatcaaaccaggtcatgactgccagctgcaggtaaagagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgcc 100  Q
    |||||| ||| |||||| | ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23388335 attattattttttatcacaacaggtcaggactgccagctgcaggtaaaaagcaaattttcccatcatgggaaacaactttgctttcccaggctaaacgcc 23388236  T
Q  101 ac 102  Q
    ||    
T  23388235 ac 23388234  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 42840848 - 42840750
Alignment:
Q  7 ttttattatcaaaccaggtcatgactgccagctgcaggtaaagagcaaagtttcccatcatg-ggaaacaactttgctttcccaggctaaacgccacct 104  Q
    ||||||||||| |  || |||||||||||| ||| ||||||| |||||||||||||||||||   |||||||||| ||||||| | || ||||||||||    
T  42840848 ttttattatcacaatagatcatgactgccaactggaggtaaaaagcaaagtttcccatcatgaaaaaacaactttactttccccgacttaacgccacct 42840750  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 40740706 - 40740666
Alignment:
Q  57 tttcccatcatgggaaacaactttgctttcccaggctaaac 97  Q
    |||||||||||||||||||| ||| |||||||| |||||||    
T  40740706 tttcccatcatgggaaacaattttcctttcccatgctaaac 40740666  T

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Target: scaffold0380 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 6112 - 6151
Alignment:
Q  57 tttcccatcatgggaaacaactttgctttcccaggctaaa 96  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  6112 tttcccatcatgggaaacaactttggtttcccaggctaaa 6151  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 10021051 - 10021004
Alignment:
Q  57 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacct 104  Q
    |||||||||||||||||| | |||| |||||||||||||||| |||||    
T  10021051 tttcccatcatgggaaactagtttgttttcccaggctaaacggcacct 10021004  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 17050398 - 17050444
Alignment:
Q  57 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 103  Q
    ||||||||||||||||||||||||  ||||||| ||||||| |||||    
T  17050398 tttcccatcatgggaaacaactttcatttcccaagctaaactccacc 17050444  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 51606960 - 51606914
Alignment:
Q  57 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 103  Q
    |||||||||||||||||||||||| ||| |||| ||||||| |||||    
T  51606960 tttcccatcatgggaaacaactttccttgcccatgctaaactccacc 51606914  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 38688643 - 38688675
Alignment:
Q  57 tttcccatcatgggaaacaactttgctttccca 89  Q
    |||||||||||||||||||||||| ||||||||    
T  38688643 tttcccatcatgggaaacaacttttctttccca 38688675  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 49420130 - 49420098
Alignment:
Q  57 tttcccatcatgggaaacaactttgctttccca 89  Q
    |||||||||||||||||||||||| ||||||||    
T  49420130 tttcccatcatgggaaacaactttcctttccca 49420098  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 44094122 - 44094086
Alignment:
Q  70 gaaacaactttgctttcccaggctaaacgccacctat 106  Q
    |||||||||||| |||||||||||||| |||||||||    
T  44094122 gaaacaactttgatttcccaggctaaatgccacctat 44094086  T

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