View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9629_low_3 (Length: 412)
Name: NF9629_low_3
Description: NF9629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9629_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 38853537 - 38853165
Alignment:
| Q |
19 |
tttcttccaccccctgcatttcacatagcagttgataatgtgttggcatgttttcttaggggtggtttctgatgttcttgaaacaaataaggtttcactt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38853537 |
tttcttccaccccctgcatttcacatagcagttgataatgtgttggcatgttttcttaggggtggtttcagatgttcttgaaacaaataaggtttcactt |
38853438 |
T |
|
| Q |
119 |
cgaattttagcgcacatggtacgtaatgttactagccaaaaatatcacatctatttagcttcatatgatttggaccattgtctgaatctataatttatgg |
218 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38853437 |
agaattttagcgcacacggta----atgttactagccaaaaatatcacatctatttagcttcatatgatttggaccattgtctgaatctataatttatgg |
38853342 |
T |
|
| Q |
219 |
tgcagtttgaattaaattggtggacaattcaaaatttagtaccaagctgtatagaattgattattcataatgtgaagggggtggtttttataattcatgt |
318 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
38853341 |
tgcagtttgaattaaattggtggacaattaaaaatttagtaccaagctgtatagaattgattatgcataatgtgaagggggtggtttttacaattcatgt |
38853242 |
T |
|
| Q |
319 |
gatagtttttcttggttagctgcataataggaatgcgaccacttaatctattgacaatgtttttataatttttgtga |
395 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38853241 |
gatagtttttcttggttagttgcataataggaatgcgaccacttaatctattgacaatgtttttataatttttgtga |
38853165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 2252721 - 2253093
Alignment:
| Q |
19 |
tttcttccaccccctgcatttcacatagcagttgataatgtgttggcatgttttcttaggggtggtttctgatgttcttgaaacaaataaggtttcactt |
118 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2252721 |
tttcttccaccccctgcatttcacatagcagctgataatgtgatggcatgttttcttagcggtggtttctgatgttcttgaaacaaataaggtttcactt |
2252820 |
T |
|
| Q |
119 |
cgaattttagcgcacatggtacgtaatgttactagccaaaaatatcacatctatttagcttcatatgatttggaccattgtctgaatctataatttatgg |
218 |
Q |
| |
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|||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2252821 |
cgaattttagcgcacacggta----atgttactagccaaaaatatcacatatatttagcttcatatgatttggaccattgtcttaatctataatttatgg |
2252916 |
T |
|
| Q |
219 |
tgcagtttgaattaaattggtggacaattcaaaatttagtaccaagctgtatagaattgattattcataatgtgaagggggtggtttttataattcatgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| |
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| T |
2252917 |
tgcagtttgaattaaattggtggacaattcaaaattaagtaccaagctgtatagaattgattatgcataatgtgaattgtgtggtttttataattcatgt |
2253016 |
T |
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| Q |
319 |
gatagtttttcttggttagctgcataataggaatgcgaccacttaatctattgacaatgtttttataatttttgtga |
395 |
Q |
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| T |
2253017 |
gatagtttttcttggctagctgcataataggaatgcgaccacttaatctattgacaatgtttttataatttttgtga |
2253093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 94 - 374
Target Start/End: Original strand, 40078524 - 40078794
Alignment:
| Q |
94 |
tcttgaaacaaataaggtttcacttcgaattttagcgcacatggtacgtaatgttactagccaaaaatatcacatctatttagcttcatatgatttggac |
193 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| |||||| |||||| |||||||||||||||||| ||| |
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| T |
40078524 |
tcttgaaacaaataaggtttcacttcgaattttagcacacacggta----atgttactagccataaatataacatctgtttagcttcatatgattttgac |
40078619 |
T |
|
| Q |
194 |
cattgtctgaatctataatttatggtgcagtttgaattaaattggtggacaattcaaaatttagtaccaagctgtatagaattgattattcataatgtga |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| ||||||||||||||||| |||||||| |
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| T |
40078620 |
cattgtctgaatctataatttatggtgcagtttgaattaaat---tggacaattcaaaacttagtatcaaggtgtatagaattgattatgattaatgtga |
40078716 |
T |
|
| Q |
294 |
agggggtggtttttataattcatgtgatagtttttcttggttagctgcataataggaatgcgaccacttaatctattgaca |
374 |
Q |
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|||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40078717 |
agggggtggtttttataattcacgtgatagaat---ttgcttagctgcataataggaatgcgaccacttaatctattgaca |
40078794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 18918853 - 18918965
Alignment:
| Q |
160 |
atatcacatctatttagcttcatatgatttggaccattgtctgaatctataatttatggtgcagtttgaattaaattggtggacaattcaaaatttagta |
259 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18918853 |
atatcacatctatttagcttcataagatttggaccattgtctgaatctataatttatggtgcagtttgaattaaattggtggacaattcaaaatttagta |
18918952 |
T |
|
| Q |
260 |
ccaagctgtatag |
272 |
Q |
| |
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||||||| ||||| |
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| T |
18918953 |
ccaagctatatag |
18918965 |
T |
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