View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9629_low_4 (Length: 406)
Name: NF9629_low_4
Description: NF9629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9629_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 780872 - 781183
Alignment:
| Q |
1 |
aaacttggtgaactggattccgagactcgaatgaccgttgaaaagatgatggtaactagtttgtttttgaatatgtcatcgtatttgtttcgcatgatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
780872 |
aaacttggtgaactggattccgagactcgaatgaccgttgaaaagatgatggtaactagtttgtttttgaatatgtcatcgtatttgtttcgcatgatcc |
780971 |
T |
|
| Q |
101 |
gtcttgattaatgttatcttgtattgttcaacagtttgatcagaggcaaaagtctatgggccttcctacaagtgaggagctcgagaaacaagaaatgatg |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
780972 |
gtcttaattaatgttatcttgtattgttcaacagtttgatcagagacagaagtctatgggccttcctacaagcgaggagctcgagaaacaggaaatgatg |
781071 |
T |
|
| Q |
201 |
aaaaaatttatgagtcaggtaagcc---tttgccatctattgac----gtaaacatttgtgagattgtttcggagagtttatggaaacagcttgtaacat |
293 |
Q |
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| T |
781072 |
aagaaatttatgagtcaggtaagccgcatttgccatctatcgacatatataagcatttgtgagattgttttggagagcttatggaaacagcttctaacat |
781171 |
T |
|
| Q |
294 |
atgtataaattg |
305 |
Q |
| |
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|||||||||||| |
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| T |
781172 |
atgtataaattg |
781183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 111 - 229
Target Start/End: Original strand, 785909 - 786027
Alignment:
| Q |
111 |
atgttatcttgtattgttcaacagtttgatcagaggcaaaagtctatgggccttcctacaagtgaggagctcgagaaacaagaaatgatgaaaaaattta |
210 |
Q |
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| T |
785909 |
atgttatcttgtattatttaacagtttgatcagaggcagaagtctatgggccttcctacaagtgaggagctccagaaacaggaaatcatgaagaaattta |
786008 |
T |
|
| Q |
211 |
tgagtcaggtaagcctttg |
229 |
Q |
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| T |
786009 |
tgagtcaggtaaacctttg |
786027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 770242 - 770129
Alignment:
| Q |
108 |
ttaatgttatcttgtattgttc-aacagtttgatcagaggcaaaagtctatgggccttcctacaagtgaggagctcgagaaacaagaaatgatgaaaaaa |
206 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | ||||||||||| ||| |
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| T |
770242 |
ttaatgttatgctgtattgttccaacagtttgatcagaggcaaaagtctatgggccttcctacaagcgaggagcttcagaaagaggaaatgatgaagaaa |
770143 |
T |
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| Q |
207 |
tttatgagtcaggt |
220 |
Q |
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|||||||| ||||| |
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| T |
770142 |
tttatgagccaggt |
770129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 770494 - 770437
Alignment:
| Q |
1 |
aaacttggtgaactggattccgagactcgaatgaccgttgaaaagatgatggtaacta |
58 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
770494 |
aaacttggtgacctggattctgagactcgaatgaccgttgaaaagatgatggtaacta |
770437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 785620 - 785678
Alignment:
| Q |
1 |
aaacttggtgaactggattccgagactcgaatgaccgttgaaaagatgatggtaactag |
59 |
Q |
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| T |
785620 |
aaacttggtgaccttgatcctgagactcgacagactgttgaaaagatgatggtaactag |
785678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 37734124 - 37734070
Alignment:
| Q |
232 |
atctattgacgtaaacatttgtgagattgtttcggagagtttatggaaacagctt |
286 |
Q |
| |
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||||| ||| |||||||||||||| ||||||| |||||||||||||||| ||||| |
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| T |
37734124 |
atctactgatgtaaacatttgtgaaattgttttggagagtttatggaaatagctt |
37734070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 19305052 - 19304998
Alignment:
| Q |
232 |
atctattgacgtaaacatttgtgagattgtttcggagagtttatggaaacagctt |
286 |
Q |
| |
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|||||||||| ||| ||||||||||||||| | ||||| ||| |||||||||||| |
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| T |
19305052 |
atctattgacataagcatttgtgagattgtgtgggagaatttgtggaaacagctt |
19304998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 11415262 - 11415219
Alignment:
| Q |
250 |
ttgtgagattgtttcggagagtttatggaaacagcttgtaacat |
293 |
Q |
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| T |
11415262 |
ttgtgagattgttttagagagtttatggaaacagcttataacat |
11415219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 43115182 - 43115132
Alignment:
| Q |
232 |
atctattgacgtaaacatttgtgagattgtttcggagagtttatggaaaca |
282 |
Q |
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|||||||||| ||| || |||||||||||||| | |||||||||||||||| |
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| T |
43115182 |
atctattgacataatcacttgtgagattgtttggaagagtttatggaaaca |
43115132 |
T |
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