View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9629_low_6 (Length: 397)
Name: NF9629_low_6
Description: NF9629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9629_low_6 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0028 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 111045 - 110659
Alignment:
| Q |
1 |
tcttaataataaaaagagtactaaacatatagttcaatttctaatactctaaacagttcatcccatggcttcttaaatttaatataatgtacttcaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
111045 |
tcttaataataaaaagagtactaagcatatagttcaatttctaatactctaaacagttcatcccatggcttcttaaatttaatataatgtacttcaaaat |
110946 |
T |
|
| Q |
101 |
tattcaagtccaggatgacattggtttaaacaaaacattcacttaaaaagaacgaaaaattatgattcattttgacccattcaaaattagcctgtaagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
110945 |
tattcaagtccaggatgacattggtttaaacaaaacattcacttaaaaagaacgaaaaattatgattcattttgacccattcaaaattagcctgtaagct |
110846 |
T |
|
| Q |
201 |
gaagcctgaaagacatccaaagcctcactcggttaagtcattatcaaaataaagaaatcatagaatcacacaaaccgatttcagcatacacttatagttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
110845 |
gaagcctgaaagacatccaaagcctcactcggttaagtcattatcaaaataa--aaatcatagaatcacaccaaccgatttcagcatacacttatagttt |
110748 |
T |
|
| Q |
301 |
ctcaacacaaaagcagtatagcatgtaactgacctctaagtcgatgacttgaaagggagaataattcaaaacttacaatgatgtccatc |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
110747 |
ctcaacacaaaagcagtatagcatgtaactgacctctaagtcgatgacttgaaagggagaataattcaaaacttacaaagatttccatc |
110659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University