View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9629_low_7 (Length: 394)

Name: NF9629_low_7
Description: NF9629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9629_low_7
NF9629_low_7
[»] chr1 (11 HSPs)
chr1 (1-378)||(31973683-31974061)
chr1 (38-107)||(4392004-4392073)
chr1 (28-107)||(4392276-4392355)
chr1 (28-107)||(15327851-15327930)
chr1 (36-111)||(31973427-31973502)
chr1 (4-102)||(5821726-5821822)
chr1 (37-104)||(25294880-25294947)
chr1 (38-111)||(12466274-12466347)
chr1 (28-105)||(27686608-27686685)
chr1 (26-111)||(34665891-34665976)
chr1 (41-110)||(47159358-47159427)
[»] chr3 (15 HSPs)
chr3 (4-105)||(43978635-43978736)
chr3 (23-106)||(23162181-23162264)
chr3 (28-107)||(40195904-40195983)
chr3 (5-112)||(48127876-48127983)
chr3 (4-111)||(53595951-53596058)
chr3 (4-111)||(53596266-53596373)
chr3 (7-104)||(16871022-16871119)
chr3 (4-111)||(16143429-16143536)
chr3 (4-107)||(43978929-43979032)
chr3 (6-104)||(17731966-17732064)
chr3 (6-104)||(19033197-19033295)
chr3 (33-111)||(32201030-32201108)
chr3 (28-102)||(43481588-43481662)
chr3 (29-90)||(48127679-48127740)
chr3 (4-104)||(54017608-54017708)
[»] chr4 (12 HSPs)
chr4 (14-111)||(10396122-10396219)
chr4 (4-105)||(47680618-47680719)
chr4 (5-111)||(10396407-10396513)
chr4 (4-101)||(11197227-11197324)
chr4 (28-102)||(48635129-48635203)
chr4 (26-111)||(53468080-53468164)
chr4 (26-111)||(34946193-34946278)
chr4 (26-111)||(922411-922494)
chr4 (26-111)||(34946487-34946571)
chr4 (56-107)||(47681154-47681205)
chr4 (24-110)||(2917494-2917580)
chr4 (4-106)||(11307350-11307452)
[»] chr2 (7 HSPs)
chr2 (26-111)||(28226328-28226413)
chr2 (7-111)||(35448678-35448782)
chr2 (33-111)||(13792583-13792661)
chr2 (26-113)||(30219963-30220050)
chr2 (4-102)||(19548144-19548242)
chr2 (26-111)||(28226646-28226731)
chr2 (32-92)||(35027913-35027973)
[»] chr6 (6 HSPs)
chr6 (13-111)||(11637790-11637888)
chr6 (28-111)||(7301384-7301467)
chr6 (5-104)||(21130118-21130217)
chr6 (4-104)||(22605315-22605415)
chr6 (43-105)||(6250081-6250143)
chr6 (41-109)||(16737902-16737969)
[»] chr5 (10 HSPs)
chr5 (5-111)||(13042530-13042636)
chr5 (5-111)||(13112528-13112634)
chr5 (26-111)||(13042987-13043072)
chr5 (26-111)||(13112983-13113068)
chr5 (4-104)||(5963681-5963781)
chr5 (33-112)||(13042702-13042781)
chr5 (33-112)||(13112700-13112779)
chr5 (63-106)||(12359478-12359521)
chr5 (6-104)||(34103552-34103650)
chr5 (4-104)||(14168932-14169032)
[»] chr8 (8 HSPs)
chr8 (4-104)||(5981794-5981893)
chr8 (4-109)||(5981502-5981607)
chr8 (28-105)||(14028322-14028399)
chr8 (5-92)||(3671202-3671289)
chr8 (56-104)||(12156770-12156818)
chr8 (24-79)||(3670879-3670934)
chr8 (28-102)||(2954309-2954383)
chr8 (4-89)||(4840531-4840616)
[»] chr7 (11 HSPs)
chr7 (28-111)||(11776431-11776514)
chr7 (5-104)||(48071384-48071483)
chr7 (5-111)||(27938751-27938857)
chr7 (4-104)||(21416201-21416301)
chr7 (26-110)||(27597977-27598061)
chr7 (6-105)||(2463442-2463541)
chr7 (16-110)||(28445204-28445297)
chr7 (7-102)||(45100184-45100279)
chr7 (28-98)||(23578088-23578158)
chr7 (33-111)||(36675184-36675262)
chr7 (38-110)||(27597692-27597763)
[»] scaffold0160 (1 HSPs)
scaffold0160 (28-100)||(27532-27604)


Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 31973683 - 31974061
Alignment:
Q  1 tgccccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacactt 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||| || ||||| ||||||||||||||||||||||    
T  31973683 tgccccaaaactttaagacaatagatttatgagtctcctctcttatattttcaatgtttccttcatttttagtcgatatcggacataatcacgcacactt 31973782  T
Q  101 gatttccaacagaagtcttagttacaaatttacgttgtattggaaaaatcaagtctcacaaagtttaaagataagacataaccagggtttataaatagaa 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31973783 gatttccaacagaaatcttagttacaaatttacgttgtattggaaaaatcaagtctcacaaagtttaaagataagacataaccaaggtttataaatagaa 31973882  T
Q  201 gcatttttcatcttacaaattgattttcttatgttgaatatttaagtttaatccaaattctaagataaagtttgactaaagattataaagaaagacatcc 300  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || | |||||||||||||||||||    
T  31973883 gcatttttcatcttacaaatcgattttcttatgatgaatatttaagtttaatccaaattttaagataaagtttgattagatattataaagaaagacatcc 31973982  T
Q  301 ctcattttacaaatcaattgtataa-ggacatacttccaactcaaattctacgacagttggagaaaatcaagttgaaca 378  Q
    ||||||||||||||||||| |||||  |||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  31973983 ctcattttacaaatcaattttataactgacatacttccaactcaaattctatgacagttggagaaaaccaagttgaaca 31974061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 4392004 - 4392073
Alignment:
Q  38 ctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttcc 107  Q
    ||||||||||||||||| ||||||| |||| ||| ||||||| ||||||||||||  ||| |||||||||    
T  4392004 ctctcttatatattcaacgtttcctccattcctactcgatgtgggacataatcacttacagttgatttcc 4392073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 4392276 - 4392355
Alignment:
Q  28 tatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttcc 107  Q
    |||| ||||||||| |||||||| ||| ||||||| ||||  || |||||||  ||||||||||| ||||||||||||||    
T  4392276 tatgggtctcctctgttatatatccaatgtttcctccattcatagtcgatgtgagacataatcactcacacttgatttcc 4392355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 15327930 - 15327851
Alignment:
Q  28 tatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttcc 107  Q
    |||| ||| ||||||||||||||  || ||||||| |||| ||| |||||||  ||||||||||| ||||||||||||||    
T  15327930 tatgggtcccctctcttatatatctaacgtttcctccattcctagtcgatgtgagacataatcactcacacttgatttcc 15327851  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 31973427 - 31973502
Alignment:
Q  36 tcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    |||||||||||||||  || | ||||| |||||||| ||| |||  ||||||||||| ||||||||||||||||||    
T  31973427 tcctctcttatatatgtaacggttcctccatttctagtcggtgtgagacataatcactcacacttgatttccaaca 31973502  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 5821822 - 5821726
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttga 102  Q
    |||||||| ||||||||||   | ||||||||| ||||||||||||| ||| ||||||| ||||    ||||||||  ||||||||||| |||||||||    
T  5821822 cccaaaaccttaaggcaatg--tgtatgagtcttctctcttatatatccaatgtttcctccattctcgatcgatgtgagacataatcactcacacttga 5821726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 25294880 - 25294947
Alignment:
Q  37 cctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatt 104  Q
    |||||||||||||| ||| ||||||| |||| |||  | |||| |||||||||||| |||||||||||    
T  25294880 cctctcttatatatccaatgtttcctccattcctagccaatgtgggacataatcactcacacttgatt 25294947  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 12466347 - 12466274
Alignment:
Q  38 ctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    ||||| ||||||| ||| |||| || |||||||| | ||||| ||||||||||||  |||||||||||| ||||    
T  12466347 ctctcgtatatatccaacgttttctccatttctagttgatgtgggacataatcacttacacttgatttctaaca 12466274  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 27686608 - 27686685
Alignment:
Q  28 tatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgattt 105  Q
    ||||||| | |||||||||||||  || ||||||| |||| ||| ||||||| | |||||||||| ||||||| ||||    
T  27686608 tatgagttttctctcttatatatctaatgtttcctccattcctagtcgatgtggaacataatcactcacacttaattt 27686685  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 34665891 - 34665976
Alignment:
Q  26 tttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    ||||||||| |||| | ||||||||  ||  ||||||  ||||||| ||||||| ||| |||||||| ||||| ||||||||||||    
T  34665891 tttatgagtttcctattttatatatctaacatttcctcaatttctagtcgatgtgggatataatcactcacacatgatttccaaca 34665976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 47159358 - 47159427
Alignment:
Q  41 tcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaac 110  Q
    |||||||||| ||| ||||||  ||||| |||  ||||| |||||||||||| |||| ||||||||||||    
T  47159358 tcttatatatccaacgtttccaccatttttaactgatgtaggacataatcactcacatttgatttccaac 47159427  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 43978635 - 43978736
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgat 103  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||| ||| ||||||| |||| ||| ||||||| |||||||||||| ||||||||||    
T  43978635 cccaaaaccttaaggcaataggtatatgagtctcctctcttatatatccaatgtttcctccattcctagtcgatgtgggacataatcactcacacttgat 43978734  T
Q  104 tt 105  Q
    ||    
T  43978735 tt 43978736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 23162264 - 23162181
Alignment:
Q  23 agatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttc 106  Q
    |||| |||||||| |||||||||||| | ||| ||||||| |||| ||||||||||| |||||||||||| ||||||| |||||    
T  23162264 agatgtatgagtcccctctcttatatgtccaacgtttcctccattcctaatcgatgtgggacataatcactcacactttatttc 23162181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 40195904 - 40195983
Alignment:
Q  28 tatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttcc 107  Q
    |||| |||||||||||||||||| ||| ||||||| |||| ||| |||||||   |||||||||| ||||||||||||||    
T  40195904 tatgggtctcctctcttatatatccaacgtttcctccattcctagtcgatgtgaaacataatcactcacacttgatttcc 40195983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 48127876 - 48127983
Alignment:
Q  5 ccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatt 104  Q
    ||||||| |||| ||||| | |||||| ||||||||||||||||||  || ||||||  ||||| || | |||||  ||||||||||| |||| ||||||    
T  48127876 ccaaaacattaaagcaatgggtttatgggtctcctctcttatatatcaaacgtttccaccatttatagttgatgtgtgacataatcactcacatttgatt 48127975  T
Q  105 tccaacag 112  Q
    ||||||||    
T  48127976 tccaacag 48127983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 53596058 - 53595951
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgat 103  Q
    |||||||| |||||| ||  | |||||| |||||||||||||||||| |||  ||| ||  ||||||| || |||| |||||||||||| | ||||||||    
T  53596058 cccaaaaccttaaggtaacgggtttatgggtctcctctcttatatatccaacattttctctatttctagtcaatgtgggacataatcactcgcacttgat 53595959  T
Q  104 ttccaaca 111  Q
    ||||||||    
T  53595958 ttccaaca 53595951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 53596373 - 53596266
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgat 103  Q
    |||||||| |||||| ||  | |||||| |||||||||||||||||| |||  ||| ||  ||||||| || |||| |||||||||||| | ||||||||    
T  53596373 cccaaaaccttaaggtaacgggtttatgggtctcctctcttatatatccaacattttctctatttctagtcaatgtgggacataatcactcgcacttgat 53596274  T
Q  104 ttccaaca 111  Q
    ||||||||    
T  53596273 ttccaaca 53596266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 16871022 - 16871119
Alignment:
Q  7 aaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatt 104  Q
    ||||| ||||||||||   |||||| ||  ||||||||||||||||   ||||||| |||| | ||||||||| |||||||||||| |||||||||||    
T  16871022 aaaaccttaaggcaatgagtttatgggttccctctcttatatattctttgtttcctccattccaaatcgatgtgggacataatcactcacacttgatt 16871119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 16143536 - 16143429
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgat 103  Q
    |||||||||||||||||||    ||||| ||||| |||||||||||| |||  ||| || ||||||||   ||||| | |||| ||||| ||||||||||    
T  16143536 cccaaaactttaaggcaatgagcttatgggtctcgtctcttatatatccaacatttgctccatttctagcagatgtggaacattatcactcacacttgat 16143437  T
Q  104 ttccaaca 111  Q
    ||||||||    
T  16143436 ttccaaca 16143429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 43978929 - 43979032
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgat 103  Q
    |||||||| |||||||||||| | || | | ||||||||||||| |  ||| ||||||| ||||  || ||||||| |||||||||||| |||| |||||    
T  43978929 cccaaaaccttaaggcaataggtatacggggctcctctcttatacacccaacgtttcctccattcttagtcgatgtgggacataatcactcacatttgat 43979028  T
Q  104 ttcc 107  Q
    ||||    
T  43979029 ttcc 43979032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 17731966 - 17732064
Alignment:
Q  6 caaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatt 104  Q
    |||||| |||||||||| | |||||| ||  ||| |||||||||| |   ||||||| |||| ||| ||||||| |||||||||||| |||||||||||    
T  17731966 caaaaccttaaggcaatgggtttatgggttccctttcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcactcacacttgatt 17732064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 19033197 - 19033295
Alignment:
Q  6 caaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatt 104  Q
    |||||| |||||||||| | |||||| ||  ||| |||||||||| |   ||||||| |||| ||| ||||||| |||||||||||| |||||||||||    
T  19033197 caaaaccttaaggcaatgggtttatgggttccctttcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcactcacacttgatt 19033295  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 32201108 - 32201030
Alignment:
Q  33 gtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    |||||||||||| |||||  ||  |||||||||||| || |||||||  ||||||||||| |||| |||||| ||||||    
T  32201108 gtctcctctcttgtatatcaaacatttccttcatttttagtcgatgtgagacataatcactcacatttgattcccaaca 32201030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 43481662 - 43481588
Alignment:
Q  28 tatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttga 102  Q
    |||| ||| |||||||||||||| |||  |||||| |||| ||| |||||||  ||||||||||| |||||||||    
T  43481662 tatgggtcccctctcttatatatccaacatttcctccattcctagtcgatgtgagacataatcactcacacttga 43481588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 48127679 - 48127740
Alignment:
Q  29 atgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatc 90  Q
    ||||||||||||||||||||||  || ||||||| ||||| || |||| || ||||||||||    
T  48127679 atgagtctcctctcttatatatcaaacgtttcctccatttgtagtcgacgtgggacataatc 48127740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 54017608 - 54017708
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgat 103  Q
    |||||||| |||||||||| | ||||||  |  |||||||||||||| |   ||||| | |||| ||| |||||||  ||||||||||| ||||||||||    
T  54017608 cccaaaaccttaaggcaatgggtttatggattccctctcttatatatcctttgtttcttccattcctagtcgatgtgagacataatcactcacacttgat 54017707  T
Q  104 t 104  Q
    |    
T  54017708 t 54017708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 10396219 - 10396122
Alignment:
Q  14 taaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    ||||||||| | |||||| |||| |||||||||||||||||  |||||| |||||||  |||||||  ||||||||||| ||||||||||||||||||    
T  10396219 taaggcaatgggtttatgggtcttctctcttatatattcaacatttcctccatttcttgtcgatgtgagacataatcactcacacttgatttccaaca 10396122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 47680719 - 47680618
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgat 103  Q
    |||||||| ||||||||  || | |||| |||||||||| ||||||||||| ||||||| ||||| |||||||||| |||||||||||| ||||||| ||    
T  47680719 cccaaaaccttaaggcatcaggtatatgggtctcctctcatatatattcaatgtttcctccatttataatcgatgtgggacataatcactcacacttaat 47680620  T
Q  104 tt 105  Q
    ||    
T  47680619 tt 47680618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 10396513 - 10396407
Alignment:
Q  5 ccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatt 104  Q
    |||||||  ||||||||| | |||||| |||||||||||||||||| |||  |||||| |||||||| || || |  ||||||||||| |||||||||||    
T  10396513 ccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaacatttcctccatttctagtcaatatgagacataatcactcacacttgatt 10396414  T
Q  105 tccaaca 111  Q
    |||||||    
T  10396413 tccaaca 10396407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 11197324 - 11197227
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttg 101  Q
    ||||||||  ||||||||| | |||||| |||||||||||||||||| ||| ||||||| |||||||| |||||||  | ||||||||| ||||||||    
T  11197324 cccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgaggcataatcactcacacttg 11197227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 48635129 - 48635203
Alignment:
Q  28 tatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttga 102  Q
    ||||||||||||||||||||| |||||  |||||| ||||| ||||| |||| |||||||||||| |||||||||    
T  48635129 tatgagtctcctctcttatatgttcaatatttcctccatttataatcaatgtgggacataatcactcacacttga 48635203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 53468080 - 53468164
Alignment:
Q  26 tttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    |||||| ||||||||| ||||||||||||  ||| || ||||||||||||||||  ||||| ||||| ||||||||||||||||||    
T  53468080 tttatgggtctcctct-ttatatattcaacatttgctccatttctaatcgatgtgagacattatcactcacacttgatttccaaca 53468164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 34946193 - 34946278
Alignment:
Q  26 tttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    |||| |||||||||| |||| |||||||| |||| || |||||| | | ||||| |||||| ||||| ||||||||||||||||||    
T  34946193 tttacgagtctcctcccttaaatattcaacgtttgctccatttcaagttgatgtgggacattatcactcacacttgatttccaaca 34946278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 922494 - 922411
Alignment:
Q  26 tttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    |||||| |||||||||||| |||||  || |||| ||||||||||| ||||||| ||||||||  || | ||||||||||||||||    
T  922494 tttatgggtctcctctcttctatatctaacgtttgcttcatttctagtcgatgtgggacataa--acactcacttgatttccaaca 922411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 34946487 - 34946571
Alignment:
Q  26 tttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    |||||| ||||| ||||||| |||| ||| |||| || |||||||| |||||||  ||||| ||||| ||||||||||||||||||    
T  34946487 tttatgggtctcttctcttaaatatccaacgtttgctccatttctagtcgatgtgagacattatcac-cacacttgatttccaaca 34946571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 47681205 - 47681154
Alignment:
Q  56 gtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttcc 107  Q
    ||||||| |||||||||||||||  |||||||||||| ||||||| ||||||    
T  47681205 gtttcctccatttctaatcgatgcgggacataatcactcacactttatttcc 47681154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 2917494 - 2917580
Alignment:
Q  24 gatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaac 110  Q
    |||||||||||||| |||||| |||||||||  ||| || ||||| || |||| ||  ||||| ||||| || ||||||||||||||    
T  2917494 gatttatgagtctcttctcttgtatattcaacatttactccatttatagtcgacgtgagacatcatcactcagacttgatttccaac 2917580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 11307350 - 11307452
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgat 103  Q
    |||||||| ||||||||  || | || | ||| |||||||||||||| ||| ||||||| |||||||| | |||||  |||||| |||  ||||||||||    
T  11307350 cccaaaacattaaggcatcaggtatacgtgtcccctctcttatatatccaaggtttcctccatttctagttgatgtgagacatagtcagtcacacttgat 11307449  T
Q  104 ttc 106  Q
    |||    
T  11307450 ttc 11307452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 28226413 - 28226328
Alignment:
Q  26 tttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    |||||| |||||||||||||||||| ||| ||||||| |||||||| ||||||| |||||| | ||| ||||||||||||||||||    
T  28226413 tttatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgggacattaacactcacacttgatttccaaca 28226328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 35448678 - 35448782
Alignment:
Q  7 aaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttc 106  Q
    |||||| |||||||||  ||||||  ||||||||||||||||||  || |||||||  ||||||| |||||||  ||||||||||  |||||||||||||    
T  35448678 aaaactctaaggcaattaatttataggtctcctctcttatatatcaaacgtttcctctatttctagtcgatgtgagacataatcatacacacttgatttc 35448777  T
Q  107 caaca 111  Q
    |||||    
T  35448778 caaca 35448782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 13792583 - 13792661
Alignment:
Q  33 gtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    ||||||||||||||||||  ||  |||||| |||||||| | ||||| |||||||||||| ||||||||||||||||||    
T  13792583 gtctcctctcttatatatcaaatatttcctccatttctagttgatgtgggacataatcactcacacttgatttccaaca 13792661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 30219963 - 30220050
Alignment:
Q  26 tttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaacaga 113  Q
    |||||| |||||||||||||  ||| |||  |||||| || ||||| ||||||| |||||||||| | ||||||||||||||||||||    
T  30219963 tttatgggtctcctctcttaagtatccaacatttcctccagttctagtcgatgtgggacataatcgctcacacttgatttccaacaga 30220050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 19548242 - 19548144
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttga 102  Q
    |||||||| ||||| || ||||| |||| |||||||||||||||||| |||  ||||||  ||||||| ||||||| |||||||| ||| ||| |||||    
T  19548242 cccaaaaccttaagacattagatatatgggtctcctctcttatatatccaacatttcctctatttctagtcgatgtgggacataaccactcacgcttga 19548144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 28226731 - 28226646
Alignment:
Q  26 tttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    ||||||||||||||||||||||||| |||  ||| |  |||||||  |||||||  || || ||||  ||||||||||||||||||    
T  28226731 tttatgagtctcctctcttatatatccaatatttgccccatttcttgtcgatgtgtgatattatcagtcacacttgatttccaaca 28226646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 35027973 - 35027913
Alignment:
Q  32 agtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcac 92  Q
    ||||||||||||||||||| |||  ||||||| |||  |||||||||| | ||||||||||    
T  35027973 agtctcctctcttatatatccaacatttcctttattcttaatcgatgtggaacataatcac 35027913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 11637790 - 11637888
Alignment:
Q  13 ttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    ||||| |||| | |||||| || ||||||||||||||||||| |||| ||||| ||||| ||||||| |||||| ||||| |||||||||||| |||||    
T  11637790 ttaagacaatgggtttatgggtatcctctcttatatattcaatgtttgcttcacttctagtcgatgttggacattatcactcacacttgattttcaaca 11637888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 7301384 - 7301467
Alignment:
Q  28 tatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    |||| ||| ||| |||||||||| ||| ||||||| |||||||| ||||||| |||||||||||| ||||||| |||| |||||    
T  7301384 tatgtgtcccctttcttatatatccaacgtttcctccatttctagtcgatgtgggacataatcactcacacttaattttcaaca 7301467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 21130118 - 21130217
Alignment:
Q  5 ccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatt 104  Q
    ||||||| |||||||||| |||||||| ||  ||||||||||||||     ||||||| |||| ||| ||||||| |||||||||||| |||||||||||    
T  21130118 ccaaaaccttaaggcaatggatttatgggttccctctcttatatatcttttgtttcctccattcctagtcgatgtgggacataatcactcacacttgatt 21130217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 22605315 - 22605415
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgat 103  Q
    |||||||| |||||||||| | |||||| || ||| ||||||||||| |   ||||||| |||| ||| ||||||| | |||||||||| ||||||||||    
T  22605315 cccaaaaccttaaggcaatgggtttatgggtttccactcttatatatcctttgtttcctccattcctagtcgatgtggaacataatcactcacacttgat 22605414  T
Q  104 t 104  Q
    |    
T  22605415 t 22605415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 6250143 - 6250081
Alignment:
Q  43 ttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgattt 105  Q
    |||||||| |||  |||||| ||| | |||||||||| |||||||||||| ||||||||||||    
T  6250143 ttatatatccaacatttcctccatgtttaatcgatgtgggacataatcactcacacttgattt 6250081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 16737969 - 16737902
Alignment:
Q  41 tcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaa 109  Q
    |||||||||| |||| |||||| |||||||||  ||||| | | |||||||||||||||| ||||||||    
T  16737969 tcttatatatccaaa-tttcctccatttctaactgatgtggaatataatcacgcacacttaatttccaa 16737902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 13042636 - 13042530
Alignment:
Q  5 ccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatt 104  Q
    ||||||| |||||||||| | |||||| ||||||||||||||||||  || |||| ||  ||||||| ||||||| ||| || ||||| |||||||||||    
T  13042636 ccaaaaccttaaggcaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtgggatattatcactcacacttgatt 13042537  T
Q  105 tccaaca 111  Q
    |||||||    
T  13042536 tccaaca 13042530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 13112634 - 13112528
Alignment:
Q  5 ccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatt 104  Q
    ||||||| ||||| |||| | |||||| ||||||||||||||||||  || |||| ||  ||||||| ||||||| ||| || ||||| |||||||||||    
T  13112634 ccaaaaccttaagacaatgggtttatgggtctcctctcttatatatctaatgtttgctctatttctagtcgatgtgggatattatcactcacacttgatt 13112535  T
Q  105 tccaaca 111  Q
    |||||||    
T  13112534 tccaaca 13112528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 13043072 - 13042987
Alignment:
Q  26 tttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    |||||| |||||||||||||||||| ||| |||| ||  ||||||| ||||||| ||| || ||||| ||| ||||||||||||||    
T  13043072 tttatgggtctcctctcttatatatccaatgtttgctctatttctagtcgatgtgggagattatcactcactcttgatttccaaca 13042987  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 13113068 - 13112983
Alignment:
Q  26 tttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    |||||| |||||||||||||||||| ||| |||| ||  ||||||| ||||||| ||| || ||||| ||| ||||||||||||||    
T  13113068 tttatgggtctcctctcttatatatccaatgtttgctctatttctagtcgatgtgggagattatcactcactcttgatttccaaca 13112983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 5963781 - 5963681
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgat 103  Q
    |||||||| ||||||||  |||| |||| ||  |||||||||||||| |   ||||||| |||| ||| ||||||| |||||||||||| ||||||||||    
T  5963781 cccaaaaccttaaggcatcagatctatgggttccctctcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcacacacacttgat 5963682  T
Q  104 t 104  Q
    |    
T  5963681 t 5963681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 13042781 - 13042702
Alignment:
Q  33 gtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaacag 112  Q
    |||| |||||||||||||  || |||| || |||||||| | ||||| | |||||||||| |||||||||||||||||||    
T  13042781 gtcttctctcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatttccaacag 13042702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 13112779 - 13112700
Alignment:
Q  33 gtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaacag 112  Q
    |||| |||||||||||||  || |||| || |||||||| | ||||| | |||||||||| |||||||||||||||||||    
T  13112779 gtcttctctcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatttccaacag 13112700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 12359478 - 12359521
Alignment:
Q  63 tcatttctaatcgatgtcggacataatcacgcacacttgatttc 106  Q
    ||||||||||||||||||||  |||||||| |||||||||||||    
T  12359478 tcatttctaatcgatgtcgggtataatcactcacacttgatttc 12359521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 34103650 - 34103552
Alignment:
Q  6 caaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatt 104  Q
    |||||| ||||||||||   |||||||||   ||||||||||||| |    |||||| |||||||| ||||||| | |||||||||| |||||||||||    
T  34103650 caaaaccttaaggcaatgagtttatgagttctctctcttatatatcctttatttcctccatttctattcgatgtggaacataatcactcacacttgatt 34103552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 14169032 - 14168932
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgat 103  Q
    |||||||||||||||||||    ||||| ||  |||||||||||||| |   ||||||| |||| ||| ||||||| |||||||||| |  |||||||||    
T  14169032 cccaaaactttaaggcaatgagcttatgggttccctctcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcccttacacttgat 14168933  T
Q  104 t 104  Q
    |    
T  14168932 t 14168932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 5981794 - 5981893
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgat 103  Q
    |||||||| |||||||||| | |||||| ||| |||||||||||||| ||| ||||||| |||| ||||| ||||| |||||||||| | ||||||||||    
T  5981794 cccaaaaccttaaggcaatgg-tttatgggtcccctctcttatatatccaacgtttcctccattcctaattgatgtgggacataatccctcacacttgat 5981892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 109
Target Start/End: Original strand, 5981502 - 5981607
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgat 103  Q
    |||||||| ||||||||  || |  ||| ||| |||||||||||||| ||| |||| || |||| ||| ||||||| |||||||||||| ||||||||||    
T  5981502 cccaaaaccttaaggcatcaggtacatgggtcccctctcttatatatccaacgttttctccattcctagtcgatgtgggacataatcactcacacttgat 5981601  T
Q  104 ttccaa 109  Q
    ||||||    
T  5981602 ttccaa 5981607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 14028399 - 14028322
Alignment:
Q  28 tatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgattt 105  Q
    ||||||||| ||||||||||||| ||| |||||||  ||| ||| ||||||| |||||||||||| ||||||||||||    
T  14028399 tatgagtctgctctcttatatatccaatgtttcctctattcctagtcgatgtaggacataatcactcacacttgattt 14028322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 3671202 - 3671289
Alignment:
Q  5 ccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcac 92  Q
    |||||||  ||||||| ||| ||||||  ||||||||||||||||| ||| |||||||  ||| ||| ||||||| ||||||||||||    
T  3671202 ccaaaaccctaaggcagtaggtttatggttctcctctcttatatatccaacgtttcctatattcctagtcgatgtgggacataatcac 3671289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 12156770 - 12156818
Alignment:
Q  56 gtttccttcatttctaatcgatgtcggacataatcacgcacacttgatt 104  Q
    ||||||| |||| ||||||||||| |||||||||||| |||||||||||    
T  12156770 gtttcctccattcctaatcgatgtgggacataatcactcacacttgatt 12156818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 3670879 - 3670934
Alignment:
Q  24 gatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgt 79  Q
    |||||||| ||||| |||||||||||| ||| ||||||| |||||||| |||||||    
T  3670879 gatttatgggtctcatctcttatatatccaacgtttcctccatttctagtcgatgt 3670934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 2954309 - 2954383
Alignment:
Q  28 tatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttga 102  Q
    |||| |||||||||||||||||| |||  ||| || |||| ||| ||||||| ||| |||||||| |||||||||    
T  2954309 tatgggtctcctctcttatatatccaacattttctccattcctagtcgatgtgggaaataatcactcacacttga 2954383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 4840616 - 4840531
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataat 89  Q
    ||||||||||||||| |  || | ||| |||| |||||||||||||| ||| ||||||| ||||  || ||||||| |||||||||    
T  4840616 cccaaaactttaaggtatcaggtatataagtcccctctcttatatatccaatgtttcctccattcatattcgatgtgggacataat 4840531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 11776431 - 11776514
Alignment:
Q  28 tatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    |||| ||| |||||||||||||||||| ||||||| |||| ||| | ||||| |||||||||||| ||||||||| | ||||||    
T  11776431 tatgggtcccctctcttatatattcaatgtttcctccattcctagttgatgtgggacataatcactcacacttgaatcccaaca 11776514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 48071483 - 48071384
Alignment:
Q  5 ccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatt 104  Q
    ||||||| ||||| |||||| |||||||||  |||||||||||||| |   ||||||| |||| ||| ||||||| ||||||||||||  ||||||||||    
T  48071483 ccaaaaccttaagacaataggtttatgagttccctctcttatatatcctttgtttcctccattcctagtcgatgtgggacataatcactgacacttgatt 48071384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 27938857 - 27938751
Alignment:
Q  5 ccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatt 104  Q
    ||||||| |||||||  ||| | |||||||||||| |||||||||| ||| | |||||  ||||  |  ||||||||||||||||||| ||||||| |||    
T  27938857 ccaaaaccttaaggctttaggtatatgagtctcctttcttatatatccaacgattcctcaattttcagccgatgtcggacataatcactcacactttatt 27938758  T
Q  105 tccaaca 111  Q
    |||||||    
T  27938757 tccaaca 27938751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 21416201 - 21416301
Alignment:
Q  4 cccaaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgat 103  Q
    ||||||||  ||||||||| | |||||| |||||||||||||||||| |||  |||  | ||| |||| | ||||| |||||||||||| ||||||||||    
T  21416201 cccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaatttttgttccatgtctagttgatgtgggacataatcactcacacttgat 21416300  T
Q  104 t 104  Q
    |    
T  21416301 t 21416301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 27598061 - 27597977
Alignment:
Q  26 tttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaac 110  Q
    |||||| |||||||||||||||||| ||| |||| ||  |||| || |||||||  ||||| ||||| |||||||||||||||||    
T  27598061 tttatgggtctcctctcttatatatccaacgtttgctcaatttatagtcgatgtgagacattatcactcacacttgatttccaac 27597977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 2463541 - 2463442
Alignment:
Q  6 caaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgattt 105  Q
    |||||| ||||||||  || | |||| ||| |||||||||||||| |||  |||||| ||||||||| | |||| ||||||||| || ||||||||||||    
T  2463541 caaaaccttaaggcatcaggtatatgtgtcccctctcttatatatccaatatttcctccatttctaaccaatgtgggacataattactcacacttgattt 2463442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 28445204 - 28445297
Alignment:
Q  16 aggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaac 110  Q
    |||||||| ||||||| |||| ||||||||||||| |||  ||| || |||| ||| ||||||| |||||| ||||| |||| ||||||||||||    
T  28445204 aggcaatatatttatgggtcttctctcttatatatccaatatttgctccatt-ctagtcgatgtgggacattatcactcacagttgatttccaac 28445297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 45100279 - 45100184
Alignment:
Q  7 aaaactttaaggcaatagatttatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttga 102  Q
    ||||||||||| || ||| | ||||||||  |||||||||||||||||  ||| ||| ||| ||| || |||| | |||||||||| |||||||||    
T  45100279 aaaactttaagacattagttatatgagtcatctctcttatatattcaacattttcttaattcctagtcaatgtggaacataatcactcacacttga 45100184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 23578088 - 23578158
Alignment:
Q  28 tatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacac 98  Q
    |||| ||| |||||||||||||| ||| |||| || |||||||| ||||||| |||| ||||||| |||||    
T  23578088 tatgtgtcacctctcttatatatccaacgttttctccatttctactcgatgtgggacttaatcactcacac 23578158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 36675262 - 36675184
Alignment:
Q  33 gtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaaca 111  Q
    ||||| |||||||||||| ||| |||| || ||||| || ||||||| |||||| ||||| |||| ||||||| |||||    
T  36675262 gtctcatctcttatatatccaacgttttctccatttatagtcgatgtgggacattatcactcacatttgattttcaaca 36675184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 27597763 - 27597692
Alignment:
Q  38 ctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacacttgatttccaac 110  Q
    ||||||||||||| ||| |||| || |||||||||||||||| | | || ||||| ||||||| |||||||||    
T  27597763 ctctcttatatatccaacgtttgctccatttctaatcgatgtggaatat-atcactcacacttaatttccaac 27597692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 27532 - 27604
Alignment:
Q  28 tatgagtctcctctcttatatattcaaagtttccttcatttctaatcgatgtcggacataatcacgcacactt 100  Q
    |||| |||||||||||||| ||||||| ||||| | |||||||| ||||||| | |||||||||| |||||||    
T  27532 tatgggtctcctctcttatgtattcaatgtttcttccatttctagtcgatgtagaacataatcactcacactt 27604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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