View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9630_low_1 (Length: 517)
Name: NF9630_low_1
Description: NF9630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9630_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 2 - 511
Target Start/End: Complemental strand, 39480646 - 39480137
Alignment:
| Q |
2 |
ggtgtggacgttctatccttgtctctaggcggtttcccggtgccactatatgatgatagtattgccattggaagctttcgagcaatggagaaagggattt |
101 |
Q |
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| T |
39480646 |
ggtgtggacgttctatccttgtctctaggtggtttcccggtgccactatatgatgatagtattgccattggaagctttcgagcaatggagaaagggattt |
39480547 |
T |
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| Q |
102 |
cagttatatgtgcggcaggaaacaatggcccaatggcgatgtctgttgccaatgatgctccttggattgcaactattggagcaagcacacttgacagaaa |
201 |
Q |
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| T |
39480546 |
cagttatatgtgcggcaggaaacaatggcccaatggcgatgtctgttgccaatgatgctccttggattgcaactattggagcaagcacacttgacagaaa |
39480447 |
T |
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| Q |
202 |
attcccagctatagttcgcatgggtaatggacaagttctctatggagaatccatgtatccggtgaacagaatagcaagcaatagcaaagaacttgagctg |
301 |
Q |
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| T |
39480446 |
attcccagctatagttcgcatgggtaatggacaagttctctatggagaatccatgtatccggtgaacagaatagcaagcaatagcaaagaacttgagctg |
39480347 |
T |
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| Q |
302 |
gtttacctctctggtggggatagtgagagtcaattttgcctcaaagggtctcttccaaaggacaaagttcaaggaaaaatggtggtatgtgatcgaggtg |
401 |
Q |
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| T |
39480346 |
gtttacctctctggtggggatagtgagagtcaattttgcctcaaagggtctcttccaaaggacaaagttcaaggaaaaatggtggtatgtgatcgaggtg |
39480247 |
T |
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| Q |
402 |
tcaacggaagatcagaaaagggtcaagctgtgaaggaagcaggcggtgctgctatgatcttggcaaacacagagctaaacttggaagaagattcggttga |
501 |
Q |
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| T |
39480246 |
tcaacggaagatcagaaaagggtcaagctgtgaaggaagcaggtggtgctgctatgatcttggcaaacacagagctaaacttggaagaagattcggttga |
39480147 |
T |
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| Q |
502 |
tgtccatctc |
511 |
Q |
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| T |
39480146 |
tgttcatctc |
39480137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 220 - 504
Target Start/End: Original strand, 39126999 - 39127281
Alignment:
| Q |
220 |
catgggtaatggacaagttctctatggagaatccatgtatccggtgaacagaatagcaagcaatagcaaagaacttgagctggtttacctctctggtggg |
319 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||||| ||||||||| |||||| |
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| T |
39126999 |
catggataatggacaagttctctatggagaatccatgtatcttgtaaacattatagcaagcaatggcaaagaacttgagccggtttacctaagtggtgga |
39127098 |
T |
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| Q |
320 |
gatagtgagagtcaattttgcctcaaagggtctcttccaaaggacaaagttcaaggaaaaatggtggtatgtgatcgaggtgtcaacggaagatcagaaa |
419 |
Q |
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| T |
39127099 |
gatagtgagagtcaattt-gcctcaatac-tctcttccaaaggtcaaatttcaaggcaaaacggtcatatgcgattgaggtgtcaatggaagatcagaaa |
39127196 |
T |
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| Q |
420 |
agggtcaagctgtgaaggaagcaggcggtgctgctatgatcttggcaaacacagagctaaacttggaagaagattcggttgatgt |
504 |
Q |
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| T |
39127197 |
agggtcaagttgtgaatgaagcaagtagtactgctatgatcttggcaaacacagagcttaacttggaagaagattcaattgatgt |
39127281 |
T |
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