View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9630_low_2 (Length: 372)
Name: NF9630_low_2
Description: NF9630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9630_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 40077143 - 40076804
Alignment:
| Q |
11 |
cataggatacttggcccaataagtgtccatttttgggtgcaacaatgcattgttgtagattatgtcgtggttgtgtatacgacaataatcaaccttgttt |
110 |
Q |
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| T |
40077143 |
cataggatacttggcccaataagtgtccattttcgggtccaacaatgcattgttgtagattatgtcgtggttgtgtatacgacaataatcaaccttgttt |
40077044 |
T |
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| Q |
111 |
ttaaagaaccgcagtaaaaggtggtcgccaatcgggttgtcacactttgtaggttgtgaaccggttataacaagtatcttttcgcttgctccgaccacga |
210 |
Q |
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| T |
40077043 |
ttaaagaaccgcagtaaaaggtggtcgccaatcgggttgtcacactttgtaggttgtgaacccgttataacaagtatcttttcgcttgctccgaccacga |
40076944 |
T |
|
| Q |
211 |
atgaaggatggtgaagtagccattctttacgcttctcgtcccaatttttcactggtttgtccatggtgtaacatgtttgtggatcgtcatagaaggtttt |
310 |
Q |
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| T |
40076943 |
atgaaggatggtgaagtagccattctttacgcttctcgtcccaatttttcactggtttgtccatggtgtaacatgtttgtggatcgtcatagaaggtttt |
40076844 |
T |
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| Q |
311 |
gtctgaagggtcgtgtaacaaatcaggaccagcaaagtcg |
350 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |
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| T |
40076843 |
gtctgaagggtcgtgtaaaaaatcaggaccagcaaagtcg |
40076804 |
T |
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