View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9631_high_6 (Length: 242)
Name: NF9631_high_6
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 28396513 - 28396265
Alignment:
| Q |
1 |
aatgataaatgcaacaaagaggtcaaatagacatgtttgaacttgaaactaagacggtcccttggttctgtagggtacagc-actatttctactaattnn |
99 |
Q |
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| T |
28396513 |
aatgataaatgcaacaaagaggtcaaatagacatgtttgaacttgaaactaggacggtcccttggttctgtagggtacagccactatttctactaattgg |
28396414 |
T |
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| Q |
100 |
nnnnn------------ttgctatatgaccttgttctactgcttctgcatgtgcaccaccatcaactatacatgtttgatattggtcaaaccctaataag |
187 |
Q |
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| T |
28396413 |
ggtggggggtgggggtgttgctatatggccttgttctactgcttctgcatgtgcaccaccatcaactatacatgtttgatattggtcaaaccctaataag |
28396314 |
T |
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| Q |
188 |
aagggtccctgtcctcaagtgcacaaaaacaacgagtccaattggttcc |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28396313 |
aagggtccctgtcctcaagtgcacaaaaacaacgagtccaattggttcc |
28396265 |
T |
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