View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9631_low_1 (Length: 713)
Name: NF9631_low_1
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 33 - 698
Target Start/End: Original strand, 12834503 - 12835177
Alignment:
| Q |
33 |
cgttgcgctattggttcagacagagagtcttcacatcatttgtctaagatccacatcaattatccctatagaaatttttggttggtaatattcatctgta |
132 |
Q |
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| T |
12834503 |
cgttgcgccattggttcagacagagaaccttcacatcatttgtctaagatccacatcaattatcccaatagaaatttttggttgataatgttcatctgta |
12834602 |
T |
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| Q |
133 |
tccacttcttcaatttcctggataagattgattgtaaaactatcaatattaactgtaaacatgaaaccagttttgattttgatcagaaggtttgcgcatg |
232 |
Q |
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| T |
12834603 |
tccacttcttcaatttcctggataagattgattgtgaaactatcaatattaactgtaatcatgcaacccgttttgattttgatcagaaggtttgcgcata |
12834702 |
T |
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| Q |
233 |
agaaaccataatttgtcaaaacaaatt-atataaatacatcacaaagttacctaaaa-tcataaaataaacaacaatagggaatgttaacaaaattaagc |
330 |
Q |
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| T |
12834703 |
agaaacgataatttgtcaatttttttttatataattacatcacaaagttacctaaaaattatagaataagtaacaatagggaatgttaacaaaattaagc |
12834802 |
T |
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| Q |
331 |
acaaa--acatcatacatgacagatatnnnnnnnnn---tcagttacctgaactacgtcctctccctttacgacccgaccaaaaacaataagtttctcat |
425 |
Q |
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| T |
12834803 |
acaaaacacataacagataaaaaaaaaaaaaaaaaaaaatcagttacctgaactacgtcctctccctttacgacccggccaaaaacagtaagtttctcat |
12834902 |
T |
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| Q |
426 |
ttagatctggtattggtgcagttgtgatgaaaagatgaaatcctttattgaagtatttatccttggaagttccgagcatgaaggcatcgtgtttcatact |
525 |
Q |
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| T |
12834903 |
ttagatctggtattggtgcagttgtgatgaaaagatcaaatcctttattgaagtatttatccttagaagttccgagcatgaatgcatcgtgtttcatact |
12835002 |
T |
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| Q |
526 |
gtaattaatcatcacgatattaagtaatcagaaaaattatgccacttgtgggtagattatcactataatggtctaaggatatcataaacatcaagt--tg |
623 |
Q |
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| T |
12835003 |
ataattaatcatcacgatattaagtaatcagaaaaattatgcaacttgtgggcagattattactataatggtctaaggatatcataaacatcaagttgtg |
12835102 |
T |
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| Q |
624 |
ttaaataaagaataagaaaaccttgtatatttcttccctctcaggttccaatcttcagtagatcccgaccctttg |
698 |
Q |
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| T |
12835103 |
tgaaattaagaataagaaaaccttgtatatttcttccctctctggttccaatcttcagtagatcccgaccctttg |
12835177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 371 - 526
Target Start/End: Complemental strand, 42252887 - 42252732
Alignment:
| Q |
371 |
acctgaactacgtcctctccctttacgacccgaccaaaaacaataagtttctcatttagatctggtattggtgcagttgtgatgaaaagatgaaatcctt |
470 |
Q |
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| T |
42252887 |
acctgaacaacatcctctcccttgacgacttgcccaaacacgataagcttctcatttagatctggaatcggtgcagttgtgatgaaaagatcaaatcctt |
42252788 |
T |
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| Q |
471 |
tattgaagtatttatccttggaagttccgagcatgaaggcatcgtgtttcatactg |
526 |
Q |
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| T |
42252787 |
tgttggtgtgttttcccttggatgttccaagcatgaatgcttcatgtttcatactg |
42252732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 42253448 - 42253378
Alignment:
| Q |
84 |
cacatcaattatccctatagaaatttttggttggtaatattcatctgtatccacttcttcaatttcctgga |
154 |
Q |
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| T |
42253448 |
cacatcaagtatcccaatagttattttaggagtgtaatgttcatctgtatccacttcttcgatttcctgga |
42253378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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