View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9631_low_11 (Length: 346)
Name: NF9631_low_11
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 51215914 - 51216229
Alignment:
| Q |
20 |
tccagttcgtgaactgtcagtcacaattagattttttcggtatggtggagttcgcttcggtttaactgttccatacannnnnnnnnaaacagtcctaact |
119 |
Q |
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| T |
51215914 |
tccagttcgtgaactgtcagtcacaattagattttttcggtatggtggagttcgcttcggtttaactgttccatacatttttttt-aaacagtcctaact |
51216012 |
T |
|
| Q |
120 |
gacacgatgttgactctaacacgaaggcattagtaagaatttaagaaagtaaacgtgtaaccgcatgtgttagaatcatcgtgttagacactagacatgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51216013 |
gacacgatgttgactctaacacgaaggcattagtaagaatttaagaaaataaacgtgtaaccgcatgtgttagaatcatcgtgttagacactagacatgt |
51216112 |
T |
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| Q |
220 |
ctttgatctaaagtgtcagtactacatagcacacaatactcaatgagctgaacctgttcttaaaacttttgctacgaacgtgtgaattgcaatatttcaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51216113 |
ctttgatctaaagtgtcagtactacatagcacacaatactcaatgagctgaacctgttcttaaaactcttgctacgaacgtgtgaattgcaatatttcaa |
51216212 |
T |
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| Q |
320 |
ataaccagctacctatg |
336 |
Q |
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||||| ||||||||||| |
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| T |
51216213 |
ataactagctacctatg |
51216229 |
T |
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