View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9631_low_13 (Length: 335)
Name: NF9631_low_13
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 24514107 - 24514416
Alignment:
| Q |
18 |
aggggctcagccaagccagaaagagatgccaatttgaatgcttgccatttactatgacacatcacagaaataaaatnnnnnnn-gttacaactcgagtaa |
116 |
Q |
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| T |
24514107 |
aggggctcagccaagccagaaagagatgccaatttgaatgcttgccatttactatgacacatcacagaaataaaataaaaaaaagttacaactcgagtaa |
24514206 |
T |
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| Q |
117 |
tataattggcaaatcttctnnnnnnn-tatcgtattttcaagaatttgatggcatatatattagcattgtnnnnnnnnntt-ataccgatttctgataag |
214 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| || | |||||||||||||||| |
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| T |
24514207 |
tataattggcaaatcttataaaaaaaatatcgtattttcaagaatttgatagcatatatattagcattgtaaaaaaaaatttacaccgatttctgataag |
24514306 |
T |
|
| Q |
215 |
aagccgtcaattttctatgtcacactatcaatttcgaaaatgaagtgatgtgccaaaataatggattctcgtgaatatcaatgtaaaaccgttttaagta |
314 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24514307 |
aagtcgtcaattttctatgtcacactatcaatttcgaaaatgaagtgatgtgcaaaaataatggattctcgtgaatatcaatgtaaaaccgttttaagta |
24514406 |
T |
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| Q |
315 |
catacccttt |
324 |
Q |
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| |||||||| |
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| T |
24514407 |
cgtacccttt |
24514416 |
T |
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