View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9631_low_15 (Length: 304)
Name: NF9631_low_15
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 47168808 - 47168528
Alignment:
| Q |
1 |
atgaccatggtcaccaagaacatgaatgatggtacatttctcatcattgaaagagtggctgtgacgtggggtagggaaagtcaatgctcatgttctcata |
100 |
Q |
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| T |
47168808 |
atgaccatggtcaccaagaacatgaatgatggtgcatttctcatcattgaaggagtggctgtgacgtggggtagggaaagtcaatgctcatgttctcata |
47168709 |
T |
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| Q |
101 |
gtacttttatcattcatgagtgaagaaggtgagttcattcacctcacttcaaaatccgcgtggggacaattgagaaactaannnnnnnnttaaaagtgca |
200 |
Q |
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| T |
47168708 |
gtactattatcattcatgagtgaagaaggtgagttcattcacctcacttcaaaatccgcgtggggacaattgagaaactaa-gggggggttaaatgtgca |
47168610 |
T |
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| Q |
201 |
attaagtttatatatatagagaaaggtggaaaacatgagatcaaactcaaacatctacataaaacgtaatcatggtgcagca |
282 |
Q |
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| T |
47168609 |
attaagtttatatatatagagaaaggtggaaaacatgagatcaaactcaaacatctacataaaacgtaatcatggtgcagca |
47168528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 47176889 - 47176786
Alignment:
| Q |
22 |
atgaatgatggtacatttctcatcattgaaagagtggctgtgacgtggggtagggaaagtcaatgctcatgttctcatagtacttttatcattcatgagt |
121 |
Q |
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|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| |||||||| | |
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| T |
47176889 |
atgaatgatgatgcctttctcatcattgaaagagtggctgtgacgtggggtagggaaagtcaatgctcatttactcatagtactattattattcatgaat |
47176790 |
T |
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| Q |
122 |
gaag |
125 |
Q |
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|||| |
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| T |
47176789 |
gaag |
47176786 |
T |
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