View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9631_low_17 (Length: 295)

Name: NF9631_low_17
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9631_low_17
NF9631_low_17
[»] chr6 (13 HSPs)
chr6 (25-290)||(5184600-5184865)
chr6 (80-278)||(5394451-5394649)
chr6 (130-290)||(5264097-5264257)
chr6 (130-285)||(5444204-5444359)
chr6 (135-272)||(5331630-5331767)
chr6 (135-290)||(5393210-5393365)
chr6 (197-272)||(5093048-5093123)
chr6 (197-266)||(5160414-5160483)
chr6 (185-282)||(5340657-5340754)
chr6 (187-278)||(5358040-5358131)
chr6 (88-152)||(5429841-5429905)
chr6 (187-281)||(5366610-5366704)
chr6 (88-152)||(5380602-5380666)
[»] scaffold0864 (1 HSPs)
scaffold0864 (189-290)||(4512-4613)
[»] chr4 (3 HSPs)
chr4 (201-272)||(6501157-6501228)
chr4 (192-271)||(7889480-7889559)
chr4 (92-263)||(4332768-4332942)
[»] chr2 (1 HSPs)
chr2 (189-263)||(22589018-22589092)
[»] chr3 (1 HSPs)
chr3 (188-285)||(48016030-48016127)


Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 25 - 290
Target Start/End: Original strand, 5184600 - 5184865
Alignment:
Q  25 ttaaccacttgactcaactctattctagtttccacaattagaagtgctttaatgcttgacttgaattacctggaatttagaactgtaaatcctgcaaggc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5184600 ttaaccacttgactcaactctattctagtttccacaattagaagtgctttaatgcttgacttgaattacctggaatttagaactgtaaatcctgcaaggc 5184699  T
Q  125 cagcggcctcacgaagagcctctctccaacgtagcaccaattcctcctcgtttaaaattttgttcaaaagactttgaaaagctattccaaactcgcctgt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5184700 cagcggcctcacgaagagcctctctccaacgtagcaccaattcctcctcgtttaaaattttgttcaaaagactttgaaaagctattccaaactcgcctgt 5184799  T
Q  225 ctgatgacgtacttcagaggggtctacatggtagaacactggaacaacaacttgtcctatgcttct 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5184800 ctgatgacgtacttcagaggggtctacatggtagaacactggaacaacaacttgtcctatggttct 5184865  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 80 - 278
Target Start/End: Complemental strand, 5394649 - 5394451
Alignment:
Q  80 ttgacttgaattacctggaatttagaactgtaaatcctgcaaggccagcggcctcacgaagagcctctctccaacgtagcaccaattcctcctcgtttaa 179  Q
    ||||||| ||| ||||| |||||| ||||  ||||||||||||||| || ||| |||||||||||||| |||||  |||| |||||||| ||||||||||    
T  5394649 ttgacttaaatcacctgaaatttaaaactacaaatcctgcaaggcctgctgccacacgaagagcctctttccaatttagcgccaattccacctcgtttaa 5394550  T
Q  180 aattttgttcaaaagactttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacactggaacaacaacttg 278  Q
    |||| ||||||||||||||| ||| ||  |||||||||| ||| ||||||  || ||||||||||| |||||||||||||||||||||||||| |||||    
T  5394549 aattctgttcaaaagactttcaaacgcccttccaaactcacctttctgattgcgcacttcagagggatctacatggtagaacactggaacaaccacttg 5394451  T

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Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 130 - 290
Target Start/End: Original strand, 5264097 - 5264257
Alignment:
Q  130 gcctcacgaagagcctctctccaacgtagcaccaattcctcctcgtttaaaattttgttcaaaagactttgaaaagctattccaaactcgcctgtctgat 229  Q
    |||| |||||||||||||||||||| | |||||||||||| |||| || ||||||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  5264097 gcctgacgaagagcctctctccaactttgcaccaattccttctcgattgaaattttgttcaaaagattttgaaaagatattccaaactctcctgtctgat 5264196  T
Q  230 gacgtacttcagaggggtctacatggtagaacactggaacaacaacttgtcctatgcttct 290  Q
    |||| |||||||| || |||| ||||||||||| ||| |||||   |||||||||| ||||    
T  5264197 gacgcacttcagatggttctaaatggtagaacaatggcacaaccttttgtcctatggttct 5264257  T

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Target: chr6; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 130 - 285
Target Start/End: Complemental strand, 5444359 - 5444204
Alignment:
Q  130 gcctcacgaagagcctctctccaacgtagcaccaattcctcctcgtttaaaattttgttcaaaagactttgaaaagctattccaaactcgcctgtctgat 229  Q
    |||||||||||||||| | |||||| ||||||||||| |||||  |||  || ||| |||||||||| ||||||||||||||||||||  ||| || |||    
T  5444359 gcctcacgaagagcctttttccaacttagcaccaatttctccttttttggaactttcttcaaaagacgttgaaaagctattccaaactttcctctcggat 5444260  T
Q  230 gacgtacttcagaggggtctacatggtagaacactggaacaacaacttgtcctatg 285  Q
     ||| ||||||||||| |||||| ||||||||||||| ||||| ||||||||||||    
T  5444259 tacgcacttcagagggatctacacggtagaacactggcacaaccacttgtcctatg 5444204  T

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Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 272
Target Start/End: Original strand, 5331630 - 5331767
Alignment:
Q  135 acgaagagcctctctccaacgtagcaccaattcctcctcgtttaaaattttgttcaaaagactttgaaaagctattccaaactcgcctgtctgatgacgt 234  Q
    |||||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||| |||||||||   | ||||||| || ||||||||||||||     
T  5331630 acgaagagcctctctccaactttgcaccaattgctcctcgtttgaaattttgttcaaaaaactttgaaataattttccaaaatctcctgtctgatgacgc 5331729  T
Q  235 acttcagaggggtctacatggtagaacactggaacaac 272  Q
    |||| ||| || |||| ||||||||||||||| |||||    
T  5331730 actttagatggttctaaatggtagaacactggcacaac 5331767  T

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Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 135 - 290
Target Start/End: Complemental strand, 5393365 - 5393210
Alignment:
Q  135 acgaagagcctctctccaacgtagcaccaattcctcctcgtttaaaattttgttcaaaagactttgaaaagctattccaaactcgcctgtctgatgacgt 234  Q
    |||||||||  ||||||||| |||| | |||||| ||| |||| || |||||||||||| ||||||||||| |||||||||||| ||| |||||| |||     
T  5393365 acgaagagctgctctccaacttagctctaattccaccttgtttgaagttttgttcaaaaaactttgaaaagatattccaaactctcctttctgataacgc 5393266  T
Q  235 acttcagaggggtctacatggtagaacactggaacaacaacttgtcctatgcttct 290  Q
    |||||||  ||| |||||||||||||||| |||||||| |||| ||||||| ||||    
T  5393265 acttcagtaggggctacatggtagaacaccggaacaaccacttctcctatggttct 5393210  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 5093123 - 5093048
Alignment:
Q  197 tttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacactggaacaac 272  Q
    ||||||| ||| | |||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||| |||||    
T  5093123 tttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaac 5093048  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 5160414 - 5160483
Alignment:
Q  197 tttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacactgg 266  Q
    ||||||| ||| | ||||||| |||| |||| ||||||||||||||||| ||||||| ||||||||||||    
T  5160414 tttgaaatgctttaccaaacttgcctttctggtgacgtacttcagagggatctacatcgtagaacactgg 5160483  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 5340754 - 5340657
Alignment:
Q  185 tgttcaaaagactttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacactggaacaacaacttgtcct 282  Q
    ||||||||||| ||||||| ||| |||||||||| ||||| |||||||||| ||| ||||| || |||| |||||| |  || | |||||||||||||    
T  5340754 tgttcaaaagattttgaaatgcttttccaaactctcctgtttgatgacgtatttctgagggatcaacatcgtagaatatcggtagaacaacttgtcct 5340657  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 5358040 - 5358131
Alignment:
Q  187 ttcaaaagactttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacactggaacaacaacttg 278  Q
    ||||| ||||||||||| ||| |||| ||||| || || |||| |||||||||||| || ||||||  |||||||||||| | |||||||||    
T  5358040 ttcaatagactttgaaatgcttttccgaactcaccagtttgattacgtacttcagatggatctacaccgtagaacactggcaaaacaacttg 5358131  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 5429905 - 5429841
Alignment:
Q  88 aattacctggaatttagaactgtaaatcctgcaaggccagcggcctcacgaagagcctctctcca 152  Q
    |||||||||||||||| ||||  |||||| |||||| |||| ||||||||||| || ||||||||    
T  5429905 aattacctggaatttaaaactacaaatccagcaaggtcagctgcctcacgaagtgcgtctctcca 5429841  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 281
Target Start/End: Complemental strand, 5366704 - 5366610
Alignment:
Q  187 ttcaaaagactttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacactggaacaacaacttgtcc 281  Q
    ||||||||| ||||||| ||| |||| || || || || |||||||| ||||| || || ||||||| | |||||||||||| ||||| ||||||    
T  5366704 ttcaaaagaatttgaaatgcttttccgaattcaccggtttgatgacggacttccgatggatctacattgaagaacactggaagaacaatttgtcc 5366610  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 5380666 - 5380602
Alignment:
Q  88 aattacctggaatttagaactgtaaatcctgcaaggccagcggcctcacgaagagcctctctcca 152  Q
    ||||||||||| |||||||||  |||||| |||| | |||| ||| || ||||||||||||||||    
T  5380666 aattacctggagtttagaactacaaatccagcaaaggcagcagccccatgaagagcctctctcca 5380602  T

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Target: scaffold0864 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0864
Description:

Target: scaffold0864; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 290
Target Start/End: Complemental strand, 4613 - 4512
Alignment:
Q  189 caaaagactttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacactggaacaacaacttgtcctatgctt 288  Q
    ||||||||||||||||| || ||||||||| ||||||||||| || |||||||| || |||| |||||| ||||| || |||||   |||||||||| ||    
T  4613 caaaagactttgaaaagatactccaaactctcctgtctgatggcgcacttcagatggttctaaatggtaaaacacaggcacaaccttttgtcctatggtt 4514  T
Q  289 ct 290  Q
    ||    
T  4513 ct 4512  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 6501157 - 6501228
Alignment:
Q  201 aaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacactggaacaac 272  Q
    ||||||| |||||||||  ||| |||||||||||||||||||||| ||||| | |||||||||||| |||||    
T  6501157 aaaagcttttccaaacttacctttctgatgacgtacttcagagggatctacctcgtagaacactggcacaac 6501228  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 271
Target Start/End: Original strand, 7889480 - 7889559
Alignment:
Q  192 aagactttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacactggaacaa 271  Q
    ||||| || ||||||| |||||||||| |||||||||||||||||||| ||||| ||||| |  ||||||||||| ||||    
T  7889480 aagacattcaaaagcttttccaaactctcctgtctgatgacgtacttccgagggatctacctcatagaacactggcacaa 7889559  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 263
Target Start/End: Complemental strand, 4332942 - 4332768
Alignment:
Q  92 acctggaatttagaactgtaaatcctgcaaggccagcggcctcacgaagagcctctctccaacgtagcacca---attcctcctcgtttaaaattttgtt 188  Q
    ||||||||||||||||   ||||||||||| |||||| || | |||||| || ||||||||   | ||||||   |||| ||| | ||||||| | ||||    
T  4332942 acctggaatttagaacaacaaatcctgcaatgccagcagcattacgaagcgcgtctctccactttggcaccatgaattcatccacttttaaaactctgtt 4332843  T
Q  189 caaaagactttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacac 263  Q
    ||||||| ||||||||||| | ||||| || ||||| |||  ||| ||||| ||||| | ||||| |||||||||    
T  4332842 caaaagattttgaaaagctttaccaaagtcacctgtttgactacgaacttccgagggatgtacatcgtagaacac 4332768  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 22589018 - 22589092
Alignment:
Q  189 caaaagactttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacac 263  Q
    |||||||||  |||||| |||||||||||| ||||||||||| || |||||||| || |||| ||||||||||||    
T  22589018 caaaagactaagaaaagatattccaaactctcctgtctgatggcgcacttcagatggttctaaatggtagaacac 22589092  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 48016030 - 48016127
Alignment:
Q  188 tcaaaagactttgaaaagctattccaaactcgcctgtctgatgacgtacttcagaggggtctacatggtagaacactggaacaacaacttgtcctatg 285  Q
    |||||||| ||||||| |||||||| ||||| ||  | |||||||||||||| || || ||||||| ||| ||||| || | ||| ||||| ||||||    
T  48016030 tcaaaagattttgaaatgctattccgaactcaccaatttgatgacgtacttccgatggatctacattgtaaaacaccggcagaaccacttggcctatg 48016127  T

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