View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9631_low_18 (Length: 287)

Name: NF9631_low_18
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9631_low_18
NF9631_low_18
[»] chr3 (3 HSPs)
chr3 (18-280)||(11752019-11752280)
chr3 (79-158)||(47395601-47395680)
chr3 (107-248)||(36834078-36834219)
[»] chr1 (4 HSPs)
chr1 (104-217)||(32920196-32920308)
chr1 (106-159)||(45921141-45921194)
chr1 (75-157)||(35601259-35601341)
chr1 (79-140)||(28562179-28562240)
[»] chr4 (1 HSPs)
chr4 (79-159)||(54475418-54475498)
[»] chr2 (3 HSPs)
chr2 (79-143)||(35133242-35133306)
chr2 (79-155)||(40330239-40330315)
chr2 (79-143)||(19267476-19267540)
[»] chr8 (1 HSPs)
chr8 (79-152)||(8622605-8622678)
[»] chr7 (1 HSPs)
chr7 (79-143)||(22902010-22902074)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 11752019 - 11752280
Alignment:
Q  18 cataagactccttaatgaacatgcttcggagtatcatgcttatgctgatttaatacaaatacaagatattaaagatctcttgtccacaagaaatttctcg 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11752019 cataagactccttaatgaacatgcttcagagtatcatgcttatgctgatttaatacaaatacaagatattaaagatctcttgtccacaagaaatttctcg 11752118  T
Q  118 attcatcattgtctgagagaaggaaattaatgtgctgacttcacggttaaatttgaagcatcctcgaatgaggatttttccactcatcctactcctccaa 217  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||    
T  11752119 attcatcattgtccgagagaaggaaatcaatgtgctgacttcatggttaaatttggagcat-ctcgaatgacgatttttccactcatcctactcctccaa 11752217  T
Q  218 acgtcctcctatctttgatcaggatcgacgccgtggaaacctactttcctagagcctatgctt 280  Q
    | | |||||||||||||||||||||||| ||| ||| ||||||||| ||||||||||| ||||    
T  11752218 atgacctcctatctttgatcaggatcgatgccatgggaacctacttccctagagcctaggctt 11752280  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 47395680 - 47395601
Alignment:
Q  79 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgactt 158  Q
    ||||||||||| |||||||| |||||||| ||||||||  || |||| ||||| |||||||| ||| ||||||| |||||    
T  47395680 caagatattaaggatctcttttccacaagcaatttctccgtttatcactgtctcagagaagggaatcaatgtgcagactt 47395601  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 248
Target Start/End: Complemental strand, 36834219 - 36834078
Alignment:
Q  107 gaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgacttcacggttaaatttgaagcatcctcgaatgaggatttttccactcatcc 206  Q
    |||| ||||| ||||||||||| ||  ||||||| ||| ||||||| ||||||  || |||  ||| |||  |||||||||| || ||| |||  |||      
T  36834219 gaaacttctccattcatcattgcctcggagaagggaatcaatgtgcagacttcttggctaagcttggagccacctcgaatgaagaatttgccagccatgt 36834120  T
Q  207 tactcctccaaacgtcctcctatctttgatcaggatcgacgc 248  Q
    |||||||||||  | ||||||  |||||||||||||||||||    
T  36834119 tactcctccaagtgacctccttcctttgatcaggatcgacgc 36834078  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 32920308 - 32920196
Alignment:
Q  104 caagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgacttcacggttaaatttgaagcatcctcgaatgaggatttttccactca 203  Q
    ||||||||||||| ||||| |||||||| | |||||||||  |||||| |||||||| || |||||| | ||| |  || |||||||||||||| || ||    
T  32920308 caagaaatttctctattcagcattgtctcatagaaggaaaccaatgtgttgacttcatggctaaattaggagc-ttttctaatgaggatttttctaccca 32920210  T
Q  204 tcctactcctccaa 217  Q
    ||||||||||||||    
T  32920209 tcctactcctccaa 32920196  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 45921194 - 45921141
Alignment:
Q  106 agaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgacttc 159  Q
    ||||| ||||| |||||||||||||| |||||||||||| ||||| ||||||||    
T  45921194 agaaacttctctattcatcattgtctcagagaaggaaatcaatgtactgacttc 45921141  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 35601259 - 35601341
Alignment:
Q  75 aatacaagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgact 157  Q
    ||||||||| || ||||| ||||||||| ||||||  ||| | ||||||||||||||  | ||||||||| ||||| ||||||    
T  35601259 aatacaagacataaaagacctcttgtcctcaagaagcttcaccattcatcattgtctccgtgaaggaaatcaatgtactgact 35601341  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 28562240 - 28562179
Alignment:
Q  79 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaagg 140  Q
    ||||| || ||||| ||||| || |||||||||||||| || ||||||||||| ||||||||    
T  28562240 caagacatcaaagacctcttttcaacaagaaatttctccatccatcattgtctaagagaagg 28562179  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 54475498 - 54475418
Alignment:
Q  79 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctgacttc 159  Q
    ||||| ||||| |||||| | ||| ||||||||||||| |||||||||||||| |||||||| ||| ||||||| ||||||    
T  54475498 caagacattaaggatctcctttcctcaagaaatttctccattcatcattgtcttagagaagggaatcaatgtgccgacttc 54475418  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 35133306 - 35133242
Alignment:
Q  79 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaa 143  Q
    |||||||| | ||||||||||||| |||| |||||| | |||||||||||||| |||||||||||    
T  35133306 caagatatcagagatctcttgtcctcaaggaatttcaccattcatcattgtctaagagaaggaaa 35133242  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 40330239 - 40330315
Alignment:
Q  79 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgctga 155  Q
    |||||||| | ||||||||||||| |||| |||||| |  ||||||||||||| |||||||||||  ||||||||||    
T  40330239 caagatatcagagatctcttgtcctcaaggaatttcaccgttcatcattgtctaagagaaggaaaccaatgtgctga 40330315  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 19267476 - 19267540
Alignment:
Q  79 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaa 143  Q
    ||||| || ||||||||||||||| |||| |||||| |  |||||||||| || |||||||||||    
T  19267476 caagacatcaaagatctcttgtcctcaaggaatttcaccgttcatcattgcctaagagaaggaaa 19267540  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 8622605 - 8622678
Alignment:
Q  79 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaattaatgtgc 152  Q
    ||||||||||||||||||||||| ||||| |||||||| |||||  |||| || |||||||  ||| |||||||    
T  8622605 caagatattaaagatctcttgtcaacaaggaatttctccattcactattgcctcagagaagagaatcaatgtgc 8622678  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 22902074 - 22902010
Alignment:
Q  79 caagatattaaagatctcttgtccacaagaaatttctcgattcatcattgtctgagagaaggaaa 143  Q
    |||||||| ||||||||||||||  |||| |||||| |  ||||||||||||| |||||||||||    
T  22902074 caagatatcaaagatctcttgtcttcaaggaatttcaccgttcatcattgtctaagagaaggaaa 22902010  T

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