View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9631_low_19 (Length: 283)
Name: NF9631_low_19
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_low_19 |
 | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 10683509 - 10683246
Alignment:
| Q |
1 |
agaagagtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaatt |
100 |
Q |
| |
|
||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
10683509 |
agaagagtatcgtgaaggtgatgaaaaggtgaagcagatcaagcttcagtctctaagaaggaaatttaaactgatgcagatggaagatgataaaaaaatt |
10683410 |
T |
|
| Q |
101 |
gttgattacatatccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10683409 |
gttgattacatatccaaactgattaatattttcaatcagatgaagacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactc |
10683310 |
T |
|
| Q |
201 |
tatccccaagatttgatttcatagttatggctatttaagaatcaaaggacatgaaaaccatgaa |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10683309 |
tatccccaagatttgatttcatagttatggctatttaagaatcaaaggacatgaaaaccatgaa |
10683246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 44913074 - 44912966
Alignment:
| Q |
36 |
agatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacatatccaaactgattaatattttcaa |
135 |
Q |
| |
|
|||| |||||||||||| ||||||| || |||||| ||||||| ||||||||||| ||||| |||||||||||||| |||||||||| |||| || | || |
|
|
| T |
44913074 |
agataaagcttcagtctttaagaagaaagtttgaaatgatgcaaatggaagatgagcaaaagattgttgattacatctccaaactgaataatgttgtaaa |
44912975 |
T |
|
| Q |
136 |
tcagatgaa |
144 |
Q |
| |
|
||||||||| |
|
|
| T |
44912974 |
tcagatgaa |
44912966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 43811398 - 43811260
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| ||||||||||||||| ||||||| |||||||||||||| || ||| ||| |
|
|
| T |
43811398 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgaattgatgcaaatggaagatgatcagaagatttctga |
43811299 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| |||||| || | ||||||||||| |
|
|
| T |
43811298 |
atacatctctaaactcattaatcttgtgaatcagatgaa |
43811260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 201599 - 201461
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
201599 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
201500 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
201499 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
201461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 316436 - 316298
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
316436 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
316337 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
316336 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
316298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 30409718 - 30409580
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
30409718 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
30409619 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
30409618 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
30409580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 28647153 - 28647240
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca |
93 |
Q |
| |
|
||||||||||| ||||||| || || || ||| |||||||| | |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28647153 |
agtatcatgaaggtgatgataaagtgaaattgattaagcttcaataactaagaaggaaatttgaactgatgcaaatggaagatgatca |
28647240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 1287569 - 1287707
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| ||||| || ||| |||||||| || || |||| ||||||||| |||||| |||||||||||||||| || ||| ||| |
|
|
| T |
1287569 |
agtatcatgaaggtgatgataaggtgaaatcgattaagcttcaatcactgagaaagaaatttgagctgatgtagatggaagatgatcagaagatttctga |
1287668 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
1287669 |
atacatctctaaactcatcaatcttgtgaatcagatgaa |
1287707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 41946058 - 41946145
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca |
93 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| || ||| | ||||||||||| |||||| |||||||||||||||| |
|
|
| T |
41946058 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactacggaggaaatttgagctgatgtagatggaagatgatca |
41946145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 16598275 - 16598070
Alignment:
| Q |
20 |
gatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacatatccaaac |
119 |
Q |
| |
|
||||||||||| ||| |||| |||||||| ||| || |||||||||||||| | |||| ||||||||||| || || |||||||||||||| || || |
|
|
| T |
16598275 |
gatgaaaaggtgaagtagataaagcttcactctttatgaaggaaatttgaatagttgcaaatggaagatgagcagaagattgttgattacatctctaaga |
16598176 |
T |
|
| Q |
120 |
tgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatccccaagatttgattt |
219 |
Q |
| |
|
|||||||| || |||| |||||| |||| ||| |||| ||||||||| ||| |||||| ||||||||||| |||||||||| | ||| |||||||| |
|
|
| T |
16598175 |
tgattaatgttgaaaatcggatgaaggcatggagtgaaactatttcagatccacaaattgttgagaagatcatgagaactctatctctaaggtttgattt |
16598076 |
T |
|
| Q |
220 |
catagt |
225 |
Q |
| |
|
|||||| |
|
|
| T |
16598075 |
catagt |
16598070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 12019531 - 12019669
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| ||||||||||||||| ||||||| |||||||||||||| || ||| ||| |
|
|
| T |
12019531 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgaattgatgcaaatggaagatgatcagaagatttctga |
12019630 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| |||||| || | ||||||||||| |
|
|
| T |
12019631 |
atacatctctaaactcattaatcttgtgaatcagatgaa |
12019669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 37659469 - 37659607
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| ||||||||||||||| ||||||| |||||||||||||| || ||| ||| |
|
|
| T |
37659469 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgaattgatgcaaatggaagatgatcagaagatttctga |
37659568 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| |||||| || | ||||||||||| |
|
|
| T |
37659569 |
atacatctctaaactcattaatcttgtgaatcagatgaa |
37659607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 10275279 - 10275366
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca |
93 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10275279 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactaagaaggaaatttgagctgatgcagatggaagatgatca |
10275366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 7103289 - 7103151
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
7103289 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
7103190 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
7103189 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
7103151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 16794911 - 16795049
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
16794911 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
16795010 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
16795011 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
16795049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 30048062 - 30048276
Alignment:
| Q |
8 |
tatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgatt |
107 |
Q |
| |
|
||||||||| | ||||| ||||| ||| |||| ||||||| |||| |||||||||||||| | ||||||| |||||||| || ||||| ||| |||||| |
|
|
| T |
30048062 |
tatcatgaaggagatgagaaggtgaaggagataaagcttcggtctttaagaaggaaatttaagttgatgcaaatggaagaggagcaaaagattcttgatt |
30048161 |
T |
|
| Q |
108 |
acatatccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatcccc |
207 |
Q |
| |
|
|||| | || |||||||| || | || ||||| |||||||| ||||||| || |||||||| ||| || ||| |||||| |||| ||||| || |
|
|
| T |
30048162 |
acatctttaagttgattaatgttgt---acaaatgaaggcatgcagtgaaacaatctctgattaacaaattattgagacgatcataagaacactatctcc |
30048258 |
T |
|
| Q |
208 |
aagatttgatttcatagt |
225 |
Q |
| |
|
||||||| |||| ||||| |
|
|
| T |
30048259 |
aagattttattttatagt |
30048276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 40371127 - 40371024
Alignment:
| Q |
41 |
aagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacatatccaaactgattaatattttcaatcaga |
140 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |||||||||||||| || ||| ||| ||||| || ||||| || ||| || | ||||||| |
|
|
| T |
40371127 |
aagcttcagtcactgagaaggaaatttgaactgatgcaaatggaagatgatcagaagatttctgaatacatctctaaactcatcaatcttgtgaatcaga |
40371028 |
T |
|
| Q |
141 |
tgaa |
144 |
Q |
| |
|
|||| |
|
|
| T |
40371027 |
tgaa |
40371024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 30696038 - 30696176
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
|||| |||||| ||||||| || || ||| ||| |||||||| || || |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
30696038 |
agtaccatgaaggtgatgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
30696137 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
30696138 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
30696176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 43548457 - 43548595
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || || ||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||| ||| ||| |
|
|
| T |
43548457 |
agtatcatgaaggtgatgataaagtgaaattgattaagcttcaatcactaagaaggaaatttgagctgatgcagatggaagatgatcaaaagatttctga |
43548556 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
|||||||| ||||| || ||| || | ||||||||||| |
|
|
| T |
43548557 |
atacatatctaaactcatcaatcttgtgaatcagatgaa |
43548595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 22931202 - 22931084
Alignment:
| Q |
26 |
aaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacatatccaaactgatta |
125 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||||||||||| ||||||| ||||||||||| |||| |||||||||||||| |||| ||||||| |
|
|
| T |
22931202 |
aaggtgaagcagataaagcttcagttattaagaaggaaatttgagttgatgcaaatggaagatgagaaaaagattgttgattacatctccatgctgatta |
22931103 |
T |
|
| Q |
126 |
atattttcaatcagatgaa |
144 |
Q |
| |
|
|| || | ||||||||||| |
|
|
| T |
22931102 |
atgttgtaaatcagatgaa |
22931084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 54171259 - 54171121
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||| ||| |
|
|
| T |
54171259 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcaaaagatttctga |
54171160 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
54171159 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
54171121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 21847870 - 21847957
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca |
93 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
21847870 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatca |
21847957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 756564 - 756702
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || || ||| |||||||| || || || || |||||||| |||||||||||||||| |||||| || ||| ||| |
|
|
| T |
756564 |
agtatcatgaaggtgatgataaagtgaaattgattaagcttcaatcactgaggagtaaatttgagctgatgcagatggaagttgatcacaagatttctga |
756663 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| |||||||| || ||| || | ||||||||||| |
|
|
| T |
756664 |
atacatctccaaactcatcaatcttgtgaatcagatgaa |
756702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 9698323 - 9698461
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||| ||| || || ||| ||| |||||||| || || |||||||||||||| ||| |||| |||||||||||||| || ||| ||| |
|
|
| T |
9698323 |
agtatcatgaaggtggtgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctggtgcaaatggaagatgatcagaagatttctga |
9698422 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
9698423 |
atacatctctaaactcatcaatcttgtgaatcagatgaa |
9698461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 54325 - 54093
Alignment:
| Q |
12 |
atgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgattacat |
111 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| ||| | || ||||||||| ||||||| | |||||||| |||| || |||||||||||||| |
|
|
| T |
54325 |
atgaaggtgatgaaaaggtgaagcagatcaagcttcaatctttgaggaggaaatttcaactgatataaatggaagaatatcataagattgttgattacat |
54226 |
T |
|
| Q |
112 |
atccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatccccaaga |
211 |
Q |
| |
|
| |||| |||| || ||| | ||||||| ||| |||| ||| ||||||| ||| |||| |||||| | ||||| ||| |||| ||||| |||||| |
|
|
| T |
54225 |
ct-caaagtgatcaacattgtgaatcagaggaaggcatggagtgggacaatttatgatcaacaaattgttgaaaagataatgagaaccctatcaccaaga |
54127 |
T |
|
| Q |
212 |
tttgatttcatagttatggctatttaagaatcaa |
245 |
Q |
| |
|
||| | ||||||||| | || ||| ||||||||| |
|
|
| T |
54126 |
tttaacttcatagttgtagcaattcaagaatcaa |
54093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 48780 - 48642
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
48780 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
48681 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
48680 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
48642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 7943998 - 7943860
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
7943998 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
7943899 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
7943898 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
7943860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 730353 - 730593
Alignment:
| Q |
9 |
atcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgatta |
108 |
Q |
| |
|
|||||||| | ||||| ||||| ||| ||| |||||||||||| | |||||||| |||||| ||||||||||||| || || ||||| |||| ||| || |
|
|
| T |
730353 |
atcatgaaggcgatgataaggtgaagttgattaagcttcagtctttgagaaggaagtttgaattgatgcagatggaggaagagcaaaatattgctgaata |
730452 |
T |
|
| Q |
109 |
catatccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatcccca |
208 |
Q |
| |
|
|| |||||||| || |||||| | ||||||||||| | || | || |||| | ||| |||| |||||| |||| || ||| |||| ||||| || |
|
|
| T |
730453 |
tatctccaaactcatcaatattgtgaatcagatgaaggcttgtggagaagcaatgactgatcaacaaattgttgagaaaatgatgagaacactatcatca |
730552 |
T |
|
| Q |
209 |
agatttgatttcatagttatggctatttaagaatcaaagga |
249 |
Q |
| |
|
||||||||||| ||||| | || ||| ||||||||||||| |
|
|
| T |
730553 |
agatttgattttatagtggttgcaattcaagaatcaaagga |
730593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 27757639 - 27757777
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| || ||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
27757639 |
agtatcatgaaggtgatgataaagtgaagttgattaaacttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
27757738 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
27757739 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
27757777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 8319419 - 8319281
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
8319419 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
8319320 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
8319319 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
8319281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 17160335 - 17160427
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaa |
98 |
Q |
| |
|
|||| |||||| ||||||| || || ||| ||| |||||||| || || || ||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
17160335 |
agtaccatgaaggtgatgataaagtgaagttgattaagcttcaatcactgaggaggaaatttgagctgatgcagatggaagatgataaaaaaa |
17160427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 17881394 - 17881256
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| || || |||||||||||||| || |||| |||||||||||||| || ||| ||| |
|
|
| T |
17881394 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctattgcaaatggaagatgatcataagatttatga |
17881295 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
17881294 |
atacatctctaaactcatcaatcttgtgaatcagatgaa |
17881256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 27571647 - 27571563
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatga |
90 |
Q |
| |
|
||||||||||| ||||||| || || || ||| |||||||| || || |||||||| |||||||||||||| ||||||||||| |
|
|
| T |
27571647 |
agtatcatgaaggtgatgataaagtgaaattgattaagcttcaatcactgagaaggaagtttgaactgatgcaaatggaagatga |
27571563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 44147800 - 44147938
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
44147800 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
44147899 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
44147900 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
44147938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 31355421 - 31355506
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgat |
91 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| || |||||||| || |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31355421 |
agtatcatgaaggtgatgataaagtgaagatgattaaacttcagtcactgagaaggaaatttgagctgatgcagatggaagatgat |
31355506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 267
Target Start/End: Original strand, 20290246 - 20290505
Alignment:
| Q |
8 |
tatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttgatt |
107 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||| ||||||||||| | |||||||| ||| || ||||||| ||||| ||||| | || |||| ||||| |
|
|
| T |
20290246 |
tatcatgaaggtgatgataaggtggagcagataaagcttcagtcattgagaaggaagtttaaattgatgcaaatggaggatgagaagaagattgctgatt |
20290345 |
T |
|
| Q |
108 |
acatatccaaactgattaatattttcaatcagatgaacacatgcagttaaacaatttcagattaacatattgtttagaagatcatgtgaactctatcccc |
207 |
Q |
| |
|
|||| |||||||| || ||| || | |||||||| || | | | || | || ||||| |||| |||||| |||| |||||| |||| ||||| || |
|
|
| T |
20290346 |
acatctccaaactaatcaatgttgtaaatcagataaaagcttatggagaagtagttacagatcaacaaattgttgagaaaatcatgagaacactatctcc |
20290445 |
T |
|
| Q |
208 |
aagatttgatttcatagttatggctatttaagaatcaaaggacatgaaaaccatgaagat |
267 |
Q |
| |
|
|||||||||||| ||||| | || ||| | ||||||||||| ||||||| ||||||| |
|
|
| T |
20290446 |
aagatttgattttatagtggttgcaattcatgaatcaaaggatgtgaaaactttgaagat |
20290505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 43683094 - 43683007
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca |
93 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| || ||||| || || |||||||||||||||||||| || |||||||||||||| |
|
|
| T |
43683094 |
agtatcatgaaggtgatgataaagtgaagttgattaaacttcaatcactgagaaggaaatttgaactgatacaaatggaagatgatca |
43683007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 27186881 - 27187019
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||| ||| || || ||| ||| |||||||| || || |||||||||||||| ||| |||| |||||||||||||| || ||| ||| |
|
|
| T |
27186881 |
agtatcatgaaggtggtgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctggtgcaaatggaagatgatcagaagatttctga |
27186980 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
27186981 |
atacatctctaaactcatcaatcttgtgaatcagatgaa |
27187019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 8051634 - 8051772
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
8051634 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
8051733 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
8051734 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
8051772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 36671293 - 36671431
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
36671293 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
36671392 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
36671393 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
36671431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 13270443 - 13270358
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgat |
91 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| || || |||||||||||||| |||||||| |||||||||||| |
|
|
| T |
13270443 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatcactgagaaggaaatttgagctgatgcaaatggaagatgat |
13270358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 35953989 - 35953920
Alignment:
| Q |
24 |
aaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatca |
93 |
Q |
| |
|
|||| |||||| ||| |||||||| || || |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
35953989 |
aaaaagtaaagttgattaagcttcaatcactgagaaggaaatttgagctgatgcaaatggaagatgatca |
35953920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 39794637 - 39794775
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| |||||||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
39794637 |
agtatcatgaaggtgatgataaagtgaagttgattaagcttcaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
39794736 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
39794737 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
39794775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 26312255 - 26312393
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| || || ||| ||| ||||| || ||||| |||||||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
26312255 |
agtatcatgaaggtgatgataaagtgaagttgattaagctccaatctctgagaaggaaatttgagctgatgcaaatggaagatgatcagaagatttctga |
26312354 |
T |
|
| Q |
106 |
ttacatatccaaactgattaatattttcaatcagatgaa |
144 |
Q |
| |
|
||||| || ||||| || ||| || | ||||||||||| |
|
|
| T |
26312355 |
gtacatctctaaactcatcaatcttgtgaatcagatgaa |
26312393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 64692 - 64579
Alignment:
| Q |
6 |
agtatcatgaatgtgatgaaaaggtaaagcagatcaagcttcagtctctaagaaggaaatttgaactgatgcagatggaagatgatcaaaaaattgttga |
105 |
Q |
| |
|
||||||||||| ||||||| ||||| || ||| |||||||| || || || ||||||||||| ||||||||||||||||||||||| || ||| ||| |
|
|
| T |
64692 |
agtatcatgaaggtgatgataaggtgaaattgattaagcttcaatcactgaggaggaaatttgagctgatgcagatggaagatgatcagaagatttctga |
64593 |
T |
|
| Q |
106 |
ttacatatccaaac |
119 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
64592 |
atacatctccaaac |
64579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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