View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9631_low_2 (Length: 523)
Name: NF9631_low_2
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Complemental strand, 30518615 - 30518120
Alignment:
| Q |
18 |
gtatattcaaagctaattaactttttattagataaaagaaacattattgatcttttttatttgcacagatcctgaagcagaagttatagctttatcacca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30518615 |
gtatattcaaagctaattaactttttattagataaaagaaacattattgatcttttttatttgcacagatcctgaagcagaagttatagctttatcacca |
30518516 |
T |
|
| Q |
118 |
aagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacataatcttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30518515 |
aagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacataatcttc |
30518416 |
T |
|
| Q |
218 |
catggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30518415 |
catggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttgg |
30518316 |
T |
|
| Q |
318 |
tgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattgg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30518315 |
tgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattgg |
30518216 |
T |
|
| Q |
418 |
aaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggtaaactaactgcctatccatccatccctatg |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
30518215 |
aaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggt-aattaactgcctatccatccatctctatg |
30518120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 467
Target Start/End: Complemental strand, 22085729 - 22085524
Alignment:
| Q |
262 |
gtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtg |
361 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||| ||||| || || | || || || || || ||||| || || | | ||||||| ||||||| |
|
|
| T |
22085729 |
gtttatgtgtgtcctgagaagacttgtgtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggtg |
22085630 |
T |
|
| Q |
362 |
aaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtga |
461 |
Q |
| |
|
| ||||||||||||||||| ||||| || || ||||| ||||| || |||||||||||||| || | ||||| |||||||| ||||||||||| |
|
|
| T |
22085629 |
agaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtga |
22085530 |
T |
|
| Q |
462 |
ctgtgg |
467 |
Q |
| |
|
||||| |
|
|
| T |
22085529 |
ttgtgg |
22085524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 83 - 486
Target Start/End: Complemental strand, 38896259 - 38895856
Alignment:
| Q |
83 |
cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatca |
182 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| ||| | ||||| |||||||||||| ||||||||| ||| || | ||||||||| ||||| |
|
|
| T |
38896259 |
cagatcctgaagcagaagtgatatctttatcaccaaaaacattgatggcaacaaacagattcgtgtgtgaaatttgtctaaaggattttcaaagggatca |
38896160 |
T |
|
| Q |
183 |
aaatcttcaactgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaa |
282 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| || || |||||||| || || ||||||| |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
38896159 |
aaatcttcaacttcatcgacgtggacataacctaccttggaagctgaaacaaagaacaagtaaagaaataaggaagagagtgtatgtgtgtccagagaag |
38896060 |
T |
|
| Q |
283 |
acttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgaga |
382 |
Q |
| |
|
|| ||||| || || ||||||||||||| | || || |||||||||||||| |||||||||||||| || || ||||| ||||||||||||||||||| |
|
|
| T |
38896059 |
acatgtgttcataatcatccttcaagggctttgggagatttaactgggataaagaagcacttttgtaggaaacacggtgagaagaagtggaagtgtgaga |
38895960 |
T |
|
| Q |
383 |
agtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaag |
482 |
Q |
| |
|
||||||||||| |||||||||||| || ||||||||||| |||||||| || |||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
38895959 |
agtgctcaaaattttatgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaatacaaatgtgattgtggcactatcttttcaag |
38895860 |
T |
|
| Q |
483 |
gtaa |
486 |
Q |
| |
|
|||| |
|
|
| T |
38895859 |
gtaa |
38895856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 92 - 485
Target Start/End: Original strand, 42898031 - 42898424
Alignment:
| Q |
92 |
aagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttca |
191 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| ||||| ||||| ||||| |||||| | ||||| | ||| ||||| |||||||||||||| |||||||| |
|
|
| T |
42898031 |
aagctgaagttatagccttatcgccaaaaacactgatggcaacaaatagattcatttgtgagatctgtaacaaaggatttcaaagagatcagaatcttca |
42898130 |
T |
|
| Q |
192 |
actgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtc |
291 |
Q |
| |
|
||| |||| | | ||||| ||| | ||||||||| | ||||| ||||||| ||| || |||| ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
42898131 |
acttcataaaagaggacacaatttgccatggaagttgaagcaaagaacaagcaatgagataaggaagaaagtttatgtgtgtccagaaccaacttgtgtg |
42898230 |
T |
|
| Q |
292 |
caccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaa |
391 |
Q |
| |
|
|||||||| || ||||| || | || ||| ||||||| || || |||||||| || |||||||| ||||| ||||||||||| ||||| |||||||| | |
|
|
| T |
42898231 |
caccatgacccatcaagagccttgggggacctaactggtatcaagaagcacttctgcagaaagcacggtgagaagaagtggaaatgtgacaagtgctcta |
42898330 |
T |
|
| Q |
392 |
aacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta |
485 |
Q |
| |
|
| ||||| ||||| ||||| |||||||||||||| ||||| ||||| || |||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
42898331 |
agaagtatgcagttcaatcagactggaaagctcactccaaaacctgtggcacaagagaatacagatgtgactgtggaaccctcttctcaaggta |
42898424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 83 - 371
Target Start/End: Complemental strand, 5435818 - 5435530
Alignment:
| Q |
83 |
cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatca |
182 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| || | ||||| |||||||||||| ||||||||| ||| || | ||||||||| ||||| |
|
|
| T |
5435818 |
cagatcctgaagcagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaatttgtctaaaggattttcaaagggatca |
5435719 |
T |
|
| Q |
183 |
aaatcttcaactgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaa |
282 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| || || |||||||| || || ||||||| ||| |||||| ||||||||| |||||||||||||||||| |
|
|
| T |
5435718 |
aaatcttcaacttcatcgacgtggacataacctaccttggaagctgaaacaaagaacaagtaaaaaaataaggaagagagtgtatgtgtgtccagagaaa |
5435619 |
T |
|
| Q |
283 |
acttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtg |
371 |
Q |
| |
|
| |||| || || ||||||||||||| | || || ||||| |||||||| |||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
5435618 |
atccgtgttcataatcatccttcaagggctttgggagatttaacagggataaagaagcacttttgtaggaagcacggtgagaagaagtg |
5435530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 17858924 - 17859066
Alignment:
| Q |
83 |
cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatca |
182 |
Q |
| |
|
|||| ||||||||| |||| ||| ||||||||||||| || | ||||| |||||||||||| ||||||||| ||| || | ||||||||| ||||| |
|
|
| T |
17858924 |
cagaccctgaagcaaaagtgatatctttatcaccaaaagcattgatggcaacaaacagattcgtgtgtgaaatttgtctaaaggattttcaaagggatca |
17859023 |
T |
|
| Q |
183 |
aaatcttcaactgcatagacgtggacataatcttccatggaag |
225 |
Q |
| |
|
|||||||||||| ||| |||||||| |||| || || |||||| |
|
|
| T |
17859024 |
aaatcttcaacttcatcgacgtggatataacctaccttggaag |
17859066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 40040758 - 40040816
Alignment:
| Q |
328 |
gggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtg |
386 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
40040758 |
gggataaaaaagcactttagtagaaagcacggtgagaagaagtggaagtgtgataagtg |
40040816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 4e-70; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 112 - 485
Target Start/End: Complemental strand, 28496482 - 28496106
Alignment:
| Q |
112 |
tcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacata |
211 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| | ||||||| ||| ||||| || |||||||||||||| |||||||| |||||| | ||||| | |
|
|
| T |
28496482 |
tcaccgaagacactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaactacatagaagaggacaca |
28496383 |
T |
|
| Q |
212 |
atcttccatggaagcttaagcagagaacaaacaaagaa---ataaagaagagagtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaag |
308 |
Q |
| |
|
| |||||||||||||||| |||||| | |||||||| || ||||||| |||||| | ||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
28496382 |
accttccatggaagcttagacagagatccaacaaagatgttatcaagaagaaagtttacatctgtccagagaagacctgtgtccaccatgacccttcaag |
28496283 |
T |
|
| Q |
309 |
ggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcag |
408 |
Q |
| |
|
|||||||||||| | || || ||||||||||||||| |||||||||| ||||| ||||||||||| ||||| || || || ||| ||||| || || |
|
|
| T |
28496282 |
agcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaa |
28496183 |
T |
|
| Q |
409 |
tcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta |
485 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || |||| |||||||| |
|
|
| T |
28496182 |
tctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggta |
28496106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 163 - 486
Target Start/End: Original strand, 4160178 - 4160504
Alignment:
| Q |
163 |
aaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaat---aaagaaga |
259 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| | ||||||||| | ||||||||||| ||| | |||| ||| ||||| || |||| |
|
|
| T |
4160178 |
aaaggttttcaaagagatcaaaatcttcagcttcataagagaggacataatttgccatggaagctaaagaaaagaaacgtcaatgaaatcataagaaaga |
4160277 |
T |
|
| Q |
260 |
gagtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatgg |
359 |
Q |
| |
|
||| ||||| ||||||||| ||| ||||| |||||||| ||||||||||||||||||||| ||||||| || || |||||||||| || ||||| || |
|
|
| T |
4160278 |
aagtatatgtttgtccagagccaacatgtgttcaccatgacccttcaagggcacttggtgacctaactggaatcaagaagcactttttcaggaagcacgg |
4160377 |
T |
|
| Q |
360 |
tgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgt |
459 |
Q |
| |
|
||| |||||||||||||||||||| || || ||||| ||||| |||||||| |||||||||||||| || |||| ||||| |||| ||| || || ||| |
|
|
| T |
4160378 |
tgagaagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgt |
4160477 |
T |
|
| Q |
460 |
gactgtggaactatcttttcaaggtaa |
486 |
Q |
| |
|
||||||||||| |||| ||||||||| |
|
|
| T |
4160478 |
gactgtggaaccctcttctcaaggtaa |
4160504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 97 - 485
Target Start/End: Original strand, 36989078 - 36989466
Alignment:
| Q |
97 |
gaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaactgc |
196 |
Q |
| |
|
||||| ||||| ||||||||| ||||| |||||||||||||||||| | ||||||| |||| || |||||||||||||| |||||||||||||||| |
|
|
| T |
36989078 |
gaagtgatagcactatcaccaacaacactaatggctacaaacagattcgtatgtgaaatatgtaacaagggttttcaaagagaccaaaatcttcaactgc |
36989177 |
T |
|
| Q |
197 |
atagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtccacca |
296 |
Q |
| |
|
| || | ||||| || | || |||||||| || || ||||| | |||||| | ||||| |||||||| ||||| || | ||||| ||||| |
|
|
| T |
36989178 |
accgaagaggacacaacttgccttggaagctaaaacaaagaactagtgcagaaattagaaagagggtttatgtttgtcctgaaccttcatgtgtacacca |
36989277 |
T |
|
| Q |
297 |
tgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgt |
396 |
Q |
| |
|
| | ||| |||| ||||||||||| | ||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| ||||| || || |
|
|
| T |
36989278 |
taaccctgcaagagcacttggtgatcttactggaattaaaaagcacttttgtagaaagcatggtgagaaaaagtggaaatgtgataagtgttctaagaaa |
36989377 |
T |
|
| Q |
397 |
tatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta |
485 |
Q |
| |
|
||||||||||| || |||||||||||||| || |||| ||||||||| || ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
36989378 |
tatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaagggaatacaaatgtgactgtggaaccatcttttccaggta |
36989466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 82 - 485
Target Start/End: Complemental strand, 12804914 - 12804511
Alignment:
| Q |
82 |
acagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatc |
181 |
Q |
| |
|
|||||||| || ||||| || ||||| |||| |||||||| || ||||| ||||||||||| | |||||| ||| ||||| |||||||| || | |
|
|
| T |
12804914 |
acagatccagatgcagaggtgatagcactatctccaaagaccctaatggcaacaaacagatttgtatgtgaagtgtgtcaaaaagggtttcaaagggagc |
12804815 |
T |
|
| Q |
182 |
aaaatcttcaactgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaa |
281 |
Q |
| |
|
||||| | ||||| |||||| | ||||| ||| | || |||||||| ||||| | | |||||||| ||||| | |||||| |||||||||| |
|
|
| T |
12804814 |
aaaatttacaactacatagaagaggacacaatttgccttggaagctaaagcaaaagagtaacaaagagccaaagagaaaggtttatttgtgtccagaacc |
12804715 |
T |
|
| Q |
282 |
aacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgag |
381 |
Q |
| |
|
||| ||||| |||||||| ||||||||||| ||||||||| | ||||| || || |||||||||| ||||||||||||||| || |||||||| ||||| |
|
|
| T |
12804714 |
aacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaagcacttttctagaaagcatggtgagaaaaagtggaaatgtgaa |
12804615 |
T |
|
| Q |
382 |
aagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaa |
481 |
Q |
| |
|
||||| || || ||||||||||| || |||||||||||||| || || || ||||||||||| || || | |||||||||||| ||| |||| |||| |
|
|
| T |
12804614 |
aagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactagggagtatagatgtgactgtggcactctcttctcaa |
12804515 |
T |
|
| Q |
482 |
ggta |
485 |
Q |
| |
|
|||| |
|
|
| T |
12804514 |
ggta |
12804511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 262 - 486
Target Start/End: Original strand, 12774840 - 12775064
Alignment:
| Q |
262 |
gtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtg |
361 |
Q |
| |
|
|||||| |||||||||| ||| ||||| |||||||| ||||||||||| ||||||||| | ||||| || || || |||| || |||||||||||||| |
|
|
| T |
12774840 |
gtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaaacactattttagaaagcatggtg |
12774939 |
T |
|
| Q |
362 |
aaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtga |
461 |
Q |
| |
|
| || || ||||||||||| ||||| || || ||||||||||| || |||||||||||||| || ||||| |||||||||| || || | |||||| |
|
|
| T |
12774940 |
agaaaaaatggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtactaaggagtatagatgtga |
12775039 |
T |
|
| Q |
462 |
ctgtggaactatcttttcaaggtaa |
486 |
Q |
| |
|
|||||| ||| |||| || |||||| |
|
|
| T |
12775040 |
ctgtggcactctcttctccaggtaa |
12775064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 467
Target Start/End: Complemental strand, 31644463 - 31644076
Alignment:
| Q |
83 |
cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatca |
182 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||||||||| | | ||||| ||||| ||||||| | || || ||||||||||||||||| |
|
|
| T |
31644463 |
cagatcctgatgctgaagtgatagctttatcaccaaagacactattaacaacaaatagatttgtgtgtgagatctgcaacaagggttttcaaagagatca |
31644364 |
T |
|
| Q |
183 |
aaatcttcaactgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaa---ataaagaagagagtttatgtgtgtccagag |
279 |
Q |
| |
|
||| || || || ||||| | |||||||| || ||||||||| | ||||| || | |||||||| || || ||||||| |||||| ||||||||| |
|
|
| T |
31644363 |
aaacctacagctacataggagaggacataacctaccatggaagttgaagcaaaggaacaacaaagatgttattaaaaagagagcttatgtttgtccagag |
31644264 |
T |
|
| Q |
280 |
aaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtg |
379 |
Q |
| |
|
| ||||| || ||| | ||||||||||| ||||| || | || || || || || || | | ||||||| |||||||| || || ||||| |||| |
|
|
| T |
31644263 |
ccttcatgtgttcatcataacccttcaagggctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtg |
31644164 |
T |
|
| Q |
380 |
agaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtgg |
467 |
Q |
| |
|
| ||||||||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||| ||||||| |||||||| ||||| |
|
|
| T |
31644163 |
ataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactcgagaatataaatgtgattgtgg |
31644076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 295 - 486
Target Start/End: Complemental strand, 50789009 - 50788818
Alignment:
| Q |
295 |
catgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaac |
394 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||||| || || |||| | | | || |||||||| ||||| ||||||||||| |||||||| || |
|
|
| T |
50789009 |
catgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtgagaagaaatggaagtgtgataagtgctctaaga |
50788910 |
T |
|
| Q |
395 |
gttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggtaa |
486 |
Q |
| |
|
||||||||||| || |||||||| || || || || || ||||| || |||||||| | ||||||||||| ||| |||| || |||||| |
|
|
| T |
50788909 |
agtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtgactgtggcactctcttctccaggtaa |
50788818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 52371452 - 52371563
Alignment:
| Q |
83 |
cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatca |
182 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| || | ||||| |||| ||||||| ||||||||| ||| || | ||||||||| ||||| |
|
|
| T |
52371452 |
cagatcctgaagcagaagtgatatctttatcaccaaaaccattgatggcaacaagcagattcgtgtgtgaaatttgtctaaaggattttcaaagggatca |
52371551 |
T |
|
| Q |
183 |
aaatcttcaact |
194 |
Q |
| |
|
|||||||||||| |
|
|
| T |
52371552 |
aaatcttcaact |
52371563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 163 - 467
Target Start/End: Original strand, 42286921 - 42287225
Alignment:
| Q |
163 |
aaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagag |
262 |
Q |
| |
|
||||| |||||||| || |||||||||||||| |||||| | ||||| |||||||| |||||||| ||||| | | |||||||| || || | | |
|
|
| T |
42286921 |
aaagggtttcaaagggagcaaaatcttcaacttcatagaagaggacacaatcttccttggaagctaaagcaaaagtccaacaaagagccaaggagaaagg |
42287020 |
T |
|
| Q |
263 |
tttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtga |
362 |
Q |
| |
|
||||| ||||||| ||| || || ||||| || || |||||||| || | || || ||||||| || |||||||| || | | | ||||| ||||| |
|
|
| T |
42287021 |
tttatttgtgtcctgagcccacatgcgtccatcacgacccttcaagagctttaggagatctaactggaattaaaaagcatttctctcgtaagcacggtga |
42287120 |
T |
|
| Q |
363 |
aaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgac |
462 |
Q |
| |
|
||||||||||| ||||| || |||||||| ||||||||||| || || |||||||| || || || || ||||||||||||||||| | |||||| |
|
|
| T |
42287121 |
gaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatatagatgtgat |
42287220 |
T |
|
| Q |
463 |
tgtgg |
467 |
Q |
| |
|
||||| |
|
|
| T |
42287221 |
tgtgg |
42287225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 130 - 470
Target Start/End: Original strand, 33186506 - 33186846
Alignment:
| Q |
130 |
gctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacataatcttccatggaagctta |
229 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||||| |||||||||||||| ||||||||||| |||||| | ||||||||||| |||||||| || | |
|
|
| T |
33186506 |
gctacaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaactga |
33186605 |
T |
|
| Q |
230 |
agcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgg |
329 |
Q |
| |
|
|| ||| ||| |||||||| | ||| || |||||||| ||||| || |||||||| || ||||||||||| || || | ||||| |||||||| |
|
|
| T |
33186606 |
gacaaagatcaagtaaagaaattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgg |
33186705 |
T |
|
| Q |
330 |
gataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactca |
429 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || |||||||| |||||||| || || || ||||||||||| || ||||||||||||||||| |
|
|
| T |
33186706 |
gataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactct |
33186805 |
T |
|
| Q |
430 |
aaaacatgtggtactagagaatacaaatgtgactgtggaac |
470 |
Q |
| |
|
||| |||||| ||||||| || |||||||| |||||||| |
|
|
| T |
33186806 |
aaagtttgtggttctagagagtataaatgtgattgtggaac |
33186846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 163 - 486
Target Start/End: Complemental strand, 5789045 - 5788722
Alignment:
| Q |
163 |
aaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagag |
262 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||| | || |||||| | ||||||||| | || || ||||||| ||||| || | |||| || |
|
|
| T |
5789045 |
aaagggtttcaaagagatcaaaatcttcaacttcacagaagaggtcataatttaccatggaagttgaaacaaagaacaagtaaagagattagaaagaaag |
5788946 |
T |
|
| Q |
263 |
tttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtga |
362 |
Q |
| |
|
| ||||| |||||||| ||||||||| || |||||||| ||||| ||| | || || || ||||| || || || ||||||| |||||||||||||| |
|
|
| T |
5788945 |
tatatgtatgtccagaaccaacttgtgtgcatcatgatccatcaagagcattaggggatttgactggaatcaagaaacacttttccagaaagcatggtga |
5788846 |
T |
|
| Q |
363 |
aaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgac |
462 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||||||||| || |||||||||||||| || ||||| ||||| ||||||||||| | ||||||| |
|
|
| T |
5788845 |
gaagaagtggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatatagatgtgac |
5788746 |
T |
|
| Q |
463 |
tgtggaactatcttttcaaggtaa |
486 |
Q |
| |
|
|||||||| |||| ||||||||| |
|
|
| T |
5788745 |
tgtggaaccctcttctcaaggtaa |
5788722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 3271670 - 3271561
Alignment:
| Q |
83 |
cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatca |
182 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||||| || | ||||| |||||||||||| ||||||||| ||| || | ||||||||| ||||| |
|
|
| T |
3271670 |
cagatcctgaagcaaaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaatttgtctaaaggattttcaaagggatca |
3271571 |
T |
|
| Q |
183 |
aaatcttcaa |
192 |
Q |
| |
|
|||||||||| |
|
|
| T |
3271570 |
aaatcttcaa |
3271561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 30864796 - 30864925
Alignment:
| Q |
83 |
cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatca |
182 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||| ||| || | ||||| |||||||||||| |||| |||| ||| || | |||| |||| ||||| |
|
|
| T |
30864796 |
cagatcctgaagcataagtgatatctttatcactaaaaccattgatggcaacaaacagattcgtgtgagaaatttgtctaaaggatttttaaagggatca |
30864895 |
T |
|
| Q |
183 |
aaatcttcaactgcatagacgtggacataa |
212 |
Q |
| |
|
|||||||||||| ||| |||||||| |||| |
|
|
| T |
30864896 |
aaatcttcaacttcatcgacgtggatataa |
30864925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 86 - 377
Target Start/End: Complemental strand, 46988110 - 46987818
Alignment:
| Q |
86 |
atcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaagg-ttttcaaagagatcaaa |
184 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| || | ||||| |||||||||||| ||||||||| ||| ||||| ||||||||| |||||| |
|
|
| T |
46988110 |
atcctgaagcagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaatctgtttaaaaggattttcaaaggaatcaaa |
46988011 |
T |
|
| Q |
185 |
atcttcaactgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaac |
284 |
Q |
| |
|
|||||||||| ||| |||||||| |||| || || |||||||| || || ||||||| |||||||||| ||||||||| ||||||||||||||||| || |
|
|
| T |
46988010 |
atcttcaacttcatcgacgtggatataacctaccttggaagctgaaacaaagaacaagtaaagaaataaggaagagagtgtatgtgtgtccagagaagac |
46987911 |
T |
|
| Q |
285 |
ttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtg |
377 |
Q |
| |
|
|||| || || ||||||||||||| || || || ||||| |||||||| |||||||||||||| || || |||| || ||||||||||| |
|
|
| T |
46987910 |
ccgtgttcataatcatccttcaagggctctgggagatttaacagggataaagaagcacttttgtaggaaccacagtgagaataagtggaagtg |
46987818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 86 - 429
Target Start/End: Original strand, 12105837 - 12106172
Alignment:
| Q |
86 |
atcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaagg-ttttcaaagagatcaaa |
184 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| || | ||||| |||||||||||| ||||||||| ||| ||||| ||||||||| |||||| |
|
|
| T |
12105837 |
atcctgaagcagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaatctgtttaaaaggattttcaaaggaatcaaa |
12105936 |
T |
|
| Q |
185 |
atcttcaactgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaac |
284 |
Q |
| |
|
|||||||||| ||| |||||||| |||| || || |||||||| || || ||||||| |||||||||| ||||||||| ||||||||||||||||| || |
|
|
| T |
12105937 |
atcttcaacttcatcgacgtggatataacctaccttggaagctgaaacaaagaacaagtaaagaaataaggaagagagtgtatgtgtgtccagagaagac |
12106036 |
T |
|
| Q |
285 |
ttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaag |
384 |
Q |
| |
|
|||| || || ||||||||||||| | || || ||||| ||||||||||||||||||| ||| || || |||| || ||||||||| |
|
|
| T |
12106037 |
ccgtgttcataatcatccttcaagggctatgggagatttaacagggataaaaaagcacttttataggaaacacagtgagaataagtggaag--------- |
12106127 |
T |
|
| Q |
385 |
tgctcaaaacgttatgctgttcagtcagattggaaagctcactca |
429 |
Q |
| |
|
||||||||| |||||||||||| || ||||||||||| |||||| |
|
|
| T |
12106128 |
tgctcaaaattttatgctgttcaatcggattggaaagcacactca |
12106172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 380
Target Start/End: Complemental strand, 52248551 - 52248460
Alignment:
| Q |
289 |
gtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtga |
380 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||| | || || | ||||||||||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
52248551 |
gtccaccacaatccttcaagagcactcggtgacctcacaggagtgaaaaagcacttttgtagaaagcatggtgagaagaaatggaaatgtga |
52248460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 46987823 - 46987775
Alignment:
| Q |
381 |
gaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactca |
429 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||||||||| |||||| |
|
|
| T |
46987823 |
gaagtgctcaaaattttatgctgttcaatcggattggaaagcacactca |
46987775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 355 - 485
Target Start/End: Complemental strand, 44150930 - 44150800
Alignment:
| Q |
355 |
catggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaataca |
454 |
Q |
| |
|
|||||||| ||||| ||||| ||||| |||||||| ||| | ||||||||||| ||||||||||| |||||| ||||| ||||||||||| ||||||| |
|
|
| T |
44150930 |
catggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagggaataca |
44150831 |
T |
|
| Q |
455 |
aatgtgactgtggaactatcttttcaaggta |
485 |
Q |
| |
|
||||||| |||||||| || ||||| ||||| |
|
|
| T |
44150830 |
aatgtgattgtggaaccatattttctaggta |
44150800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 163 - 486
Target Start/End: Original strand, 40749194 - 40749517
Alignment:
| Q |
163 |
aaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagag |
262 |
Q |
| |
|
||||| || ||||||||||| |||||||| || |||||| | || || || || ||||||||||| ||||| ||| | ||||||||| || ||| | | |
|
|
| T |
40749194 |
aaaggattccaaagagatcagaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaagatccaacaaagaaccaaggaaaaagg |
40749293 |
T |
|
| Q |
263 |
tttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtga |
362 |
Q |
| |
|
| || | || || ||||| |||||||||||||| || | | ||||| | |||||| | || || ||||| || || ||| ||||||| ||||| || |
|
|
| T |
40749294 |
tatacatctgcccggagaatacttgtgtccaccacgacgcggctagggccttgggtgacctcaccggaataaagaaacattttagtagaaaacatggcga |
40749393 |
T |
|
| Q |
363 |
aaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgac |
462 |
Q |
| |
|
||||| ||||||||||| ||||| || || ||||| || || || ||||||||||||||| | ||||| ||||||||||||||||| || ||||| |
|
|
| T |
40749394 |
gaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcacactaaaacttgtggtactagagaatataagtgtgat |
40749493 |
T |
|
| Q |
463 |
tgtggaactatcttttcaaggtaa |
486 |
Q |
| |
|
||||| || |||| ||||||||| |
|
|
| T |
40749494 |
tgtggtacactcttctcaaggtaa |
40749517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 12952373 - 12952505
Alignment:
| Q |
83 |
cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatca |
182 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||||||| || | ||||| |||||||||||| ||||||||| ||| || | ||||||||| ||||| |
|
|
| T |
12952373 |
cagatccggaagcagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaatttgtctaaaggattttcaaagggatca |
12952472 |
T |
|
| Q |
183 |
aaatcttcaactgcatagacgtggacataatct |
215 |
Q |
| |
|
|||||||||||| ||| | |||||| ||||||| |
|
|
| T |
12952473 |
aaatcttcaacttcatcgtcgtggatataatct |
12952505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 12938224 - 12938353
Alignment:
| Q |
83 |
cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatca |
182 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||||||| || | ||||| |||||||||||| ||||||||| ||| || | ||||||||| ||||| |
|
|
| T |
12938224 |
cagatccggaagcagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaatttgtctaaaggattttcaaagggatca |
12938323 |
T |
|
| Q |
183 |
aaatcttcaactgcatagacgtggacataa |
212 |
Q |
| |
|
|||||||||||| ||| | |||||| |||| |
|
|
| T |
12938324 |
aaatcttcaacttcatcgtcgtggatataa |
12938353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 429
Target Start/End: Original strand, 1983162 - 1983246
Alignment:
| Q |
345 |
ttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactca |
429 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||||||||||||||||| ||||| |||||| || ||||||||||| |||||| |
|
|
| T |
1983162 |
ttgtaggaagcacagtgagaagaagtggaagtgtgagaagtgctcaaaattttatgttgttcaatcggattggaaagcacactca |
1983246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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