View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9631_low_21 (Length: 276)
Name: NF9631_low_21
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 26 - 269
Target Start/End: Complemental strand, 41234376 - 41234130
Alignment:
| Q |
26 |
tttcttagcaattaaggaaatatattgaagttaggaaatagatagaactattgattagtcnnnnnnnnngttgggaaatacagtcaacaaaagatataga |
125 |
Q |
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| T |
41234376 |
tttcttagcaattaaggaaatatattaaagttaggaaatagatagaactattgattagtcaaaaaaaa-gttgggaaatacagtcaacaaaagatataga |
41234278 |
T |
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| Q |
126 |
tgaaaaatatatatgaaaattttgagtaacttctcagtttttctcactaaatttattgacgaaatgacgagacattagtggcgatttcaattttttaatc |
225 |
Q |
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| T |
41234277 |
tgaaaaatatatatgaaaattttgagtaacttctcagtttttctcactaaatttattgacgaaatgacgagacattagtggcgatttcaattttttaatc |
41234178 |
T |
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| Q |
226 |
ccctacaaaatctctaattggccac----tctcattaaggtttataag |
269 |
Q |
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| T |
41234177 |
ccctacaaaatctctaattggccactctctctcattaaggtttataag |
41234130 |
T |
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