View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9631_low_22 (Length: 263)
Name: NF9631_low_22
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_low_22 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 8988902 - 8989148
Alignment:
| Q |
1 |
atgttctgatagtttctctctatgttgatgatatgttagtgaccggagatgatacaaggctggttgaagagttcaaacaagaaatgatgcaggcttttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
8988902 |
atgttctgatagtttctctctatgttgatgatatgttagtgaccggagatgatacaaggctcgttgaagagttcaaacaagaaatgatgaaggcttttga |
8989001 |
T |
|
| Q |
101 |
aatgacacatcttggtcttatgacttactttcttggtattgaaatcgagcaaaatgaaaatgaggtgtttatttgccnnnnnnnntatacaaaagaaata |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||| |
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|
| T |
8989002 |
aatgacagatcttggtcttatgacttactttcttggtattgaaatcaagcaaaatgaaaatgaggtgttcatttgccaaaaaaaatatgcaaaagaaata |
8989101 |
T |
|
| Q |
201 |
ttgaagaaatttcagatggaggagtgcaaagtagttagcacaccaat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8989102 |
ttgaagaaatttcagatggaggagtgcaaagtagttagcacaccaat |
8989148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 43585787 - 43586033
Alignment:
| Q |
1 |
atgttctgatagtttctctctatgttgatgatatgttagtgaccggagatgatacaaggctggttgaagagttcaaacaagaaatgatgcaggcttttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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|
| T |
43585787 |
atgttctgatagtttctctctatgttgatgatatgttagtgaccggagatgatacaaggctcgttgaagagttcaaacaagaaatgatgaaggcttttga |
43585886 |
T |
|
| Q |
101 |
aatgacacatcttggtcttatgacttactttcttggtattgaaatcgagcaaaatgaaaatgaggtgtttatttgccnnnnnnnntatacaaaagaaata |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||| |
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|
| T |
43585887 |
aatgacagatcttggtcttatgacttactttcttggtattgaaatcaagcaaaatgaaaatgaggtgttcatttgccaaaaaaaatatgcaaaagaaata |
43585986 |
T |
|
| Q |
201 |
ttgaagaaatttcagatggaggagtgcaaagtagttagcacaccaat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43585987 |
ttgaagaaatttcagatggaggagtgcaaagtagttagcacaccaat |
43586033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 35966992 - 35966746
Alignment:
| Q |
1 |
atgttctgatagtttctctctatgttgatgatatgttagtgaccggagatgatacaaggctggttgaagagttcaaacaagaaatgatgcaggcttttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
35966992 |
atgttctgatagtttctctctatgttgatgatatgttactgaccggagatgatacaaggctggttgaagagttcaaacaagaaatgatgaaggtttttga |
35966893 |
T |
|
| Q |
101 |
aatgacacatcttggtcttatgacttactttcttggtattgaaatcgagcaaaatgaaaatgaggtgtttatttgccnnnnnnnntatacaaaagaaata |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||| |
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|
| T |
35966892 |
aatgatcgatcttggtcttatgacttactttcttggtgttgaaatcaagcaaaatgaaaatgaggtgttcatttgccaaaaaaaatatgcaaaagaaata |
35966793 |
T |
|
| Q |
201 |
ttgaagaaatttcagatggaggagtgcaaagtagttagcacaccaat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35966792 |
ttgaagaaatttcagatggaggagtgcaaagtagttagcacaccaat |
35966746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 35988404 - 35988158
Alignment:
| Q |
1 |
atgttctgatagtttctctctatgttgatgatatgttagtgaccggagatgatacaaggctggttgaagagttcaaacaagaaatgatgcaggcttttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
35988404 |
atgttctgatagtttctctctatgttgatgatatgttactgaccggagatgatacaaggctggttgaagagttcaaacaagaaatgatgaaggtttttga |
35988305 |
T |
|
| Q |
101 |
aatgacacatcttggtcttatgacttactttcttggtattgaaatcgagcaaaatgaaaatgaggtgtttatttgccnnnnnnnntatacaaaagaaata |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||| |
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|
| T |
35988304 |
aatgatcgatcttggtcttatgacttactttcttggtgttgaaatcaagcaaaatgaaaatgaggtgttcatttgccaaaaaaaatatgcaaaagaaata |
35988205 |
T |
|
| Q |
201 |
ttgaagaaatttcagatggaggagtgcaaagtagttagcacaccaat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35988204 |
ttgaagaaatttcagatggaggagtgcaaagtagttagcacaccaat |
35988158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 43444475 - 43444721
Alignment:
| Q |
1 |
atgttctgatagtttctctctatgttgatgatatgttagtgaccggagatgatacaaggctggttgaagagttcaaacaagaaatgatgcaggcttttga |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43444475 |
atgttttgatagtttctctctatgttgatgatatgttagtgaccggagatggtacaaggctggttgaagagttcaaacaagaaatgatgtaggcttttga |
43444574 |
T |
|
| Q |
101 |
aatgacacatcttggtcttatgacttactttcttggtattgaaatcgagcaaaatgaaaatgaggtgtttatttgccnnnnnnnntatacaaaagaaata |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||| |
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|
| T |
43444575 |
aatgacagatcttggtcttatgacttactttcttggtattgaaatcaagcaaaatgaaaatgaggtgttcatttgccaaaaaaaatatgcaaaagaaata |
43444674 |
T |
|
| Q |
201 |
ttgaagaaatttcagatggaggagtgcaaagtagttagcacaccaat |
247 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43444675 |
ttgaagaaatttcatatggaggagtgcaaagtagttagcacaccaat |
43444721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 18014114 - 18014357
Alignment:
| Q |
4 |
ttctgatagtttctctctatgttgatgatatgttagtgaccggagatgatacaaggctggttgaagagttcaaacaagaaatgatgcaggcttttgaaat |
103 |
Q |
| |
|
|||| |||||||||||||||||| ||||| | |||||||||||||||||||||||| ||||||| | |||||||||||||||||||| || |||||||| |
|
|
| T |
18014114 |
ttctcatagtttctctctatgtttatgatcttttagtgaccggagatgatacaaggttggttgagaaattcaaacaagaaatgatgcaagcatttgaaat |
18014213 |
T |
|
| Q |
104 |
gacacatcttggtcttatgacttactttcttggtattgaaatcgagcaaaatgaaaatgaggtgtttatttgccnnnnnnnntatacaaaagaaatattg |
203 |
Q |
| |
|
|||| |||||||||||||||| || |||||||| ||||| ||| | |||| ||| ||||| |||||||| |||| ||| |||| ||||||||| |
|
|
| T |
18014214 |
gacagatcttggtcttatgacatattttcttggaattgagatcaaacaaagtgacaatgaagtgtttatctgccaaaaaaaatatgcaaaggaaatattg |
18014313 |
T |
|
| Q |
204 |
aagaaatttcagatggaggagtgcaaagtagttagcacaccaat |
247 |
Q |
| |
|
| ||||| |||||||||||||| || | | ||||||||||||| |
|
|
| T |
18014314 |
agaaaattccagatggaggagtgtaaggcaattagcacaccaat |
18014357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 32528244 - 32528316
Alignment:
| Q |
81 |
gaaatgatgcaggcttttgaaatgacacatcttggtcttatgacttactttcttggtattgaaatcgagcaaa |
153 |
Q |
| |
|
||||||||| ||| ||||| |||||| ||||||| | ||||||||||||||||| || |||||| |||||| |
|
|
| T |
32528244 |
gaaatgatgaaggaatttgagatgacagatcttggattaatgacttactttcttggaatggaaatcaagcaaa |
32528316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 26256925 - 26257171
Alignment:
| Q |
1 |
atgttctgatagtttctctctatgttgatgatatgttagtgaccggagatgatacaaggctggttgaagagttcaaacaagaaatgatgcaggcttttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26256925 |
atgttctgatagtttctctctatgttgatgatatgttagtgactggagatgatacaaggttggttgaagagttcaaacaagaaatgatgaaggcttttga |
26257024 |
T |
|
| Q |
101 |
aatgacacatcttggtcttatgacttactttcttggtattgaaatcgagcaaaatgaaaatgaggtgtttatttgccnnnnnnnntatacaaaagaaata |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| ||| ||||||||||| |
|
|
| T |
26257025 |
aatgacagatcttggtcttatgacttactttcttggtattgaaatcaagcaaaatgaaaatgaggagttcatttgccaaaaaaaatatgcaaaagaaata |
26257124 |
T |
|
| Q |
201 |
ttgaagaaatttcagatggaggagtgcaaagtagttagcacaccaat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26257125 |
ttgaagaaatttcagatggaggagtgcaaagtagttagcacaccaat |
26257171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 16941910 - 16942154
Alignment:
| Q |
4 |
ttctgatagtttctctctatgttgatgatatgttagtgaccggagatgatacaaggctggttgaagagttcaaacaagaaatgatgcaggcttttgaaat |
103 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16941910 |
ttctgatagtttccctctatgttgatgatatgttagtgaccggagatgatacaaggctggttgaagagttcaaacaagaaatgatgcaggctttcgaaat |
16942009 |
T |
|
| Q |
104 |
gacacatcttggtcttatgacttactttcttggtattgaaatcgagcaaaatgaaaatgaggtgtttatttg-ccnnnnnnnntatacaaaagaaatatt |
202 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| ||||||||| | |||||||||||| ||||| || || | ||| ||| ||||||||| |
|
|
| T |
16942010 |
gacagatcttggtcttatgacctactttcttggcattgaaatcaaacaaaatgaaaattgtgtgttcatctgtcaaaaaaaagtatgcaatagaaatatt |
16942109 |
T |
|
| Q |
203 |
gaagaaatttcagatggaggagtgcaaagtagttagcacaccaat |
247 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
16942110 |
gaagaaattcaagatggaggagtgcaaagtagttaggacaccaat |
16942154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 28394031 - 28394103
Alignment:
| Q |
81 |
gaaatgatgcaggcttttgaaatgacacatcttggtcttatgacttactttcttggtattgaaatcgagcaaa |
153 |
Q |
| |
|
||||||||| ||| ||||| |||||| ||||||| | ||||||||||||||||| || |||||| |||||| |
|
|
| T |
28394031 |
gaaatgatgaaggaatttgagatgacagatcttggattaatgacttactttcttggaatggaaatcaagcaaa |
28394103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 24012770 - 24012713
Alignment:
| Q |
190 |
caaaagaaatattgaagaaatttcagatggaggagtgcaaagtagttagcacaccaat |
247 |
Q |
| |
|
|||| |||||||||| |||||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
24012770 |
caaaggaaatattgacaaaattttagatggaagagtgtaaagtagttagcacaccaat |
24012713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 6832064 - 6831992
Alignment:
| Q |
81 |
gaaatgatgcaggcttttgaaatgacacatcttggtcttatgacttactttcttggtattgaaatcgagcaaa |
153 |
Q |
| |
|
||||||||| ||| ||||| |||||| ||||||| | ||||||||||||||||| || |||||| |||||| |
|
|
| T |
6832064 |
gaaatgatgaaggaatttgagatgacagatcttggattaatgacttactttcttggaatggaaatcaagcaaa |
6831992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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