View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9631_low_27 (Length: 244)
Name: NF9631_low_27
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 4782921 - 4783030
Alignment:
| Q |
1 |
aatgaataaataaatagaaacacatgaaagtttcactcaatgatgtaatacaagtcatgacaataaagtggcaagtgttctgcttatcataaaataatgg |
100 |
Q |
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| T |
4782921 |
aatgaataaataaattgaaacacatgaaagtttcactcaatgatgtaatacaagtcatgacaataaagtggcaagtgttctgcttatcataaaataatgg |
4783020 |
T |
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| Q |
101 |
tggcgaatga |
110 |
Q |
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|||||||||| |
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| T |
4783021 |
tggcgaatga |
4783030 |
T |
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Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 4783089 - 4783145
Alignment:
| Q |
169 |
gttaagtggttataaaatctttcaaggtttcactgccttagggatcaagcaaacaag |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4783089 |
gttaagtggttataaaatctttcaaggtttcactgccttagggatcaagcaaacaag |
4783145 |
T |
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