View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9631_low_3 (Length: 468)
Name: NF9631_low_3
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 76 - 449
Target Start/End: Original strand, 38173686 - 38174059
Alignment:
| Q |
76 |
tttgagtaccatcatagttattagcaataatgtcgcctctaatttcatcatcattagcgataatctcgcttctaacaacagcatcaataatctcgacatt |
175 |
Q |
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| T |
38173686 |
tttgagtaccatcatagttattagtaataatgtcgcctctaatttcatcatcattagagataatctcgcttctaacaacagcatcaataatctcgacatt |
38173785 |
T |
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| Q |
176 |
ttcattaacttcattttcaacaccggaacacgcaacaggaggatccgaaagaggaggaggagaatcaggggcataatcaaaattaatgaaggaatcggcg |
275 |
Q |
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| T |
38173786 |
ttcattaacttcattttcaacaccggaacacgcaacgggaggatccgaaagaggaggaggggaatcaggggcataatcaaaattaatgaaggaatcggcg |
38173885 |
T |
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| Q |
276 |
agggcgaaatcgtggtcgttgttgtccatattttttgtggaggcgcggcggaagagggattaggtttagggttaacagaaagatttgatggaattaatag |
375 |
Q |
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| T |
38173886 |
agggcgaaaacgtcgtcgtcgttgtccatgttttttgtggaggcgcggcggaagagggattaggtttagggttaacaaaaagatttgatggaattaatag |
38173985 |
T |
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| Q |
376 |
cgaaaatatgtacttggtttccatatcggcaaccaatgagggtttcggttttggtttctttttggaaatgctta |
449 |
Q |
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| T |
38173986 |
cgaaaatttgtacttggtttccatatcggcaaccaatgagggtttcggttttggtttctttttggaaatgctta |
38174059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 26415363 - 26415287
Alignment:
| Q |
349 |
aacagaaagatttgatggaattaatagcgaaaatatgtacttggtttccatatcggcaaccaatgagggtttcggttt |
426 |
Q |
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| T |
26415363 |
aacacaaagatttcgtggaattaatagaaaaaat-tgtacttggtttccatatcggcaaccaatgaggatttaggttt |
26415287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 26416826 - 26416898
Alignment:
| Q |
349 |
aacagaaagatttgatggaattaatagcgaaaatatgt-acttggtttccatatcggcaaccaatgagggtttc |
421 |
Q |
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| T |
26416826 |
aacataaagatttggtggaattaatag-gaaaaaatgtgacatgctttccatatcgggaaccaatgagggtttc |
26416898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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