View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9631_low_33 (Length: 230)
Name: NF9631_low_33
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_low_33 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4782669 - 4782898
Alignment:
| Q |
1 |
catggggaatggagggttatatgcatatcaaaaggaacacaaataaaaagtatggggtgtgtgctataaattcatgggcttataatccagtcaaatataa |
100 |
Q |
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| T |
4782669 |
catggggaatggagggttatatgcatatcaaaaggaacacaaataaaaagtatggggtgtgtgctataaattcatgggcttataatccagtcaaatataa |
4782768 |
T |
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| Q |
101 |
tggaaggaaaccaaatattagttccattttagatcaacaataagttaaagcaagaattatggttgtatgcatatagaatttgtttgtgtgggcattgttg |
200 |
Q |
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| T |
4782769 |
tggaaggaaaccaaatattagttccattttagatcaacaataagttaaagcaagaattatggttttatgcatatagaatttgtttgtgtgggcattgttg |
4782868 |
T |
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| Q |
201 |
atgttgttttcaacacgtcagttatcctat |
230 |
Q |
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| T |
4782869 |
atgttgttttcaacacgtcagttatcctat |
4782898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4787415 - 4787515
Alignment:
| Q |
1 |
catggggaatggagggttatatgcatatcaaaaggaacacaaataaaaagtatggggtgtgtgctataaattcatgggcttataatccagtcaaatataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| || ||| |||||| |||||||||||||||||||| |
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| T |
4787415 |
catggggaatggagggttatatgcatatcaaaaggaacactaataaagagtatggggtgtgtgcaatcaatgaatgggcatataatccagtcaaatataa |
4787514 |
T |
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| Q |
101 |
t |
101 |
Q |
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| T |
4787515 |
t |
4787515 |
T |
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