View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9631_low_34 (Length: 229)
Name: NF9631_low_34
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_low_34 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 28396800 - 28396575
Alignment:
| Q |
7 |
tatttgttatt-gctttgtattgtaaataaaatatcacataaaatacataattttgtgtttgattcataga--tagatcaagtagcaacaacaaaaatca |
103 |
Q |
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| T |
28396800 |
tatttgttatttgctttgtattttaaaaaaaatatcacataaaatacataattttgtgtttgattcatataaatagatcaagtagcaacaacaacaatca |
28396701 |
T |
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| Q |
104 |
agaaatttaacttcacaattaattaagaatttcttgatggaatgacctagaatttccaaaccgctgattggatcacgtgaatgttatgtcagagctgtct |
203 |
Q |
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| T |
28396700 |
agaaatttaacttcacaattaattaagaatttcttgatggaatgacctagaatttccaaaccgctgattggatcacgtgaatgttatgtcagagctgtct |
28396601 |
T |
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| Q |
204 |
ggcctctccaatttgattgtctgtca |
229 |
Q |
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| T |
28396600 |
ggcctccccaatttgattgtctgtca |
28396575 |
T |
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