View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9631_low_37 (Length: 222)
Name: NF9631_low_37
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 4930105 - 4929911
Alignment:
| Q |
19 |
aaaatatctctgattgaaaagacaatgaaatccaaatatggttgaggtattcaaattcaaagagttgggcgcatcataagtcaataaagttgatgaaaat |
118 |
Q |
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| T |
4930105 |
aaaatatttctgattgaaaagacaatgaaatccaaatatagttgaggtattcaaattcaaagagttgggcgcatcataagtcaataaagttgatgaaaat |
4930006 |
T |
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| Q |
119 |
ttcaacttccttcccttccttttagtttctagtttgcctataaaagaaagttaatccaattgtcaaacactttgttaaagaatcctttgcttctc |
213 |
Q |
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| T |
4930005 |
ttcaacttccttcccttccttttagtttctagtttgcctataaaagaaagttaatccaattgtcaaacactttgctaaagaatcctttgcttctc |
4929911 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 35844641 - 35844715
Alignment:
| Q |
54 |
atatggttgaggtattcaa---attcaaagagttgggcgcatcataagtcaataaagttgatgaaaatttcaact |
125 |
Q |
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| T |
35844641 |
atatggttgcggtattcaacaaattaaaagagtttggtgcatcagaagtcaataaagttgatataaatttcaact |
35844715 |
T |
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