View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9631_low_5 (Length: 408)

Name: NF9631_low_5
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9631_low_5
NF9631_low_5
[»] chr4 (21 HSPs)
chr4 (2-393)||(24242606-24242995)
chr4 (315-388)||(19468270-19468343)
chr4 (315-388)||(19450929-19451002)
chr4 (315-388)||(27019336-27019409)
chr4 (315-388)||(52391374-52391447)
chr4 (315-388)||(23545552-23545625)
chr4 (315-388)||(24684913-24684986)
chr4 (323-388)||(19838728-19838793)
chr4 (315-370)||(18882296-18882351)
chr4 (315-381)||(37432895-37432961)
chr4 (315-388)||(33632232-33632304)
chr4 (324-381)||(44916681-44916738)
chr4 (317-388)||(17409900-17409971)
chr4 (321-370)||(3085739-3085788)
chr4 (315-375)||(16069236-16069296)
chr4 (316-346)||(19752129-19752159)
chr4 (316-346)||(19787647-19787677)
chr4 (315-381)||(55813947-55814013)
chr4 (315-383)||(22130634-22130701)
chr4 (317-381)||(34941361-34941425)
chr4 (316-368)||(41970479-41970531)
[»] chr6 (3 HSPs)
chr6 (315-388)||(30623402-30623475)
chr6 (315-381)||(34692437-34692503)
chr6 (315-388)||(4371916-4371988)
[»] chr8 (18 HSPs)
chr8 (315-383)||(36967099-36967167)
chr8 (315-388)||(27874710-27874783)
chr8 (315-388)||(28014887-28014960)
chr8 (317-388)||(38843780-38843851)
chr8 (315-370)||(9580138-9580193)
chr8 (320-383)||(30136862-30136925)
chr8 (315-381)||(38212973-38213039)
chr8 (324-388)||(14391637-14391701)
chr8 (316-388)||(16445766-16445837)
chr8 (315-383)||(32186267-32186335)
chr8 (315-391)||(297168-297244)
chr8 (315-388)||(45006046-45006118)
chr8 (316-360)||(41979904-41979948)
chr8 (317-388)||(12189619-12189690)
chr8 (317-388)||(12434047-12434118)
chr8 (315-381)||(12132066-12132132)
chr8 (317-370)||(14961694-14961747)
chr8 (324-388)||(34869560-34869624)
[»] chr3 (12 HSPs)
chr3 (315-388)||(54527735-54527808)
chr3 (315-382)||(8165728-8165795)
chr3 (315-381)||(42180135-42180201)
chr3 (315-380)||(38785964-38786029)
chr3 (315-383)||(50204484-50204552)
chr3 (321-388)||(51567852-51567919)
chr3 (315-388)||(23803075-23803148)
chr3 (315-376)||(51401528-51401589)
chr3 (315-383)||(45983587-45983655)
chr3 (315-376)||(31318729-31318790)
chr3 (315-370)||(44609712-44609767)
chr3 (315-367)||(1569219-1569271)
[»] chr2 (11 HSPs)
chr2 (315-388)||(36612760-36612833)
chr2 (315-388)||(36620611-36620684)
chr2 (315-388)||(43806436-43806509)
chr2 (315-381)||(4576355-4576421)
chr2 (315-370)||(26003375-26003430)
chr2 (315-388)||(26129135-26129208)
chr2 (319-383)||(29142155-29142219)
chr2 (315-370)||(9747411-9747466)
chr2 (315-370)||(15411651-15411706)
chr2 (319-383)||(16755052-16755118)
chr2 (315-370)||(37471769-37471824)
[»] chr7 (8 HSPs)
chr7 (315-383)||(44473541-44473609)
chr7 (315-381)||(4969856-4969922)
chr7 (316-388)||(45501535-45501607)
chr7 (315-370)||(29398163-29398218)
chr7 (315-381)||(26037176-26037242)
chr7 (315-381)||(47707913-47707979)
chr7 (315-388)||(29692569-29692642)
chr7 (315-388)||(36032572-36032645)
[»] chr1 (18 HSPs)
chr1 (315-383)||(35512806-35512874)
chr1 (315-388)||(38812816-38812889)
chr1 (315-383)||(13321957-13322025)
chr1 (315-381)||(6180269-6180335)
chr1 (315-388)||(7824887-7824960)
chr1 (315-378)||(28016266-28016329)
chr1 (315-388)||(23808510-23808583)
chr1 (315-388)||(39310815-39310888)
chr1 (317-388)||(22167411-22167482)
chr1 (319-376)||(22331711-22331768)
chr1 (320-381)||(25956732-25956793)
chr1 (323-388)||(26978124-26978189)
chr1 (315-377)||(4607562-4607624)
chr1 (315-381)||(23576443-23576509)
chr1 (315-381)||(25532292-25532358)
chr1 (313-370)||(3168095-3168152)
chr1 (315-388)||(51920460-51920533)
chr1 (324-388)||(21036705-21036769)
[»] chr5 (8 HSPs)
chr5 (315-381)||(3398303-3398369)
chr5 (315-388)||(18841734-18841807)
chr5 (315-381)||(26265073-26265139)
chr5 (316-383)||(40980454-40980521)
chr5 (315-370)||(23995445-23995500)
chr5 (316-370)||(36474659-36474713)
chr5 (315-369)||(39047257-39047311)
chr5 (316-388)||(16883640-16883712)
[»] scaffold0129 (1 HSPs)
scaffold0129 (321-381)||(13693-13753)
[»] scaffold0111 (1 HSPs)
scaffold0111 (315-352)||(41094-41131)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 2 - 393
Target Start/End: Original strand, 24242606 - 24242995
Alignment:
Q  2 gcatagggtgtgctactttttagattctattagtggtaccatattttatctaaagataggatctccattattccaaacaaaccatgaaaccaatatggga 101  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24242606 gcatagggtgtgctactttt-agattctattagtggtaccatattttatctaaagataggatctccattattccaaacaaaccatgaaaccaatatagga 24242704  T
Q  102 aatatcaacaacaaagaaaacaatttggaaaaaagctcatgggaatttgtactctattagttgcatagtgctactttgcggattacttgtacaaaagctc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24242705 aatatcaacaacaaagaaaacaatttggaaaaaagctcatgggaatttgtactctattagttgcatagtgctactttgcggattacttgtacaaaagctc 24242804  T
Q  202 tctttannnnnnnaggtaagcagttgatgaaatttggaatgatatatctctattactatcttctctaatcaaaccaattttggaaaagaattattgttta 301  Q
    ||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  24242805 tcttta-ttttttaggtaagcagttgatgaaatttggaatgatatatctctattactatcttctctgatcaaaccaatttgggaaaagaattattgttta 24242903  T
Q  302 catttaacaagacgttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaaataat 393  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||    
T  24242904 catttaacaagaagttaagaagtttaaaatataaattttgtattgaaatttgtacatttaatattaaatctaaaacttttgagtaaaataat 24242995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 19468343 - 19468270
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||    
T  19468343 gttaagaagtttaaaatagaaattttgtattgaaacttgtacatttaatattaaatataaaacttttgaataaa 19468270  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 19450929 - 19451002
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||| |||||||||||| ||||    
T  19450929 gttaagaagtttaaaatagaaattttgtattggaacttgtacatttaatattaaatataaaacttttgaataaa 19451002  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 27019409 - 27019336
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||| |||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||    
T  27019409 gttaaaaagtttaaaatagaaattttgtattgaaacttgtacatttaatattaaatataaaacttttgaataaa 27019336  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 52391447 - 52391374
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||| |||||||||||| ||||    
T  52391447 gttaagaagtttaaaatagaaattttgtattggaacttgtacatttaatattaaatataaaacttttgaataaa 52391374  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 23545625 - 23545552
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||| |||||||||||||||||||||||||| || ||| |||||| ||||||||| |||||||||||| ||||    
T  23545625 gttaataagtttaaaatataaattttgtattggaaattgtacatttaatattaaatataaaacttttgaataaa 23545552  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 24684986 - 24684913
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||||| |||||||| |||| |||||| |||||| ||||||||| |||||||||||| ||||    
T  24684986 gttaagaagtttaaaatagaaattttgcattggaacttgtacatttaatattaaatataaaacttttgaataaa 24684913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 19838728 - 19838793
Alignment:
Q  323 gtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||| ||||||||||||| |||||| |||||| ||||||||| |||||||||||| ||||    
T  19838728 gtttaaaatagaaattttgtattggaacttgtacatttaatattaaatataaaacttttgaataaa 19838793  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 370
Target Start/End: Original strand, 18882296 - 18882351
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaat 370  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||| |||||||||    
T  18882296 gttaagaagtttaaaatagaaattttgtattggaacttgtacatttaatattaaat 18882351  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 37432895 - 37432961
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    |||||||||||||||||| |||||||||||||||| ||| |||||| ||| ||||| ||||| ||||    
T  37432895 gttaagaagtttaaaataaaaattttgtattgaaatttgtacatttaatactaaatataaaattttt 37432961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 33632232 - 33632304
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||| |||||||||||| ||||||  |||||||||||| |||||| ||||||||| |||||||||||| ||||    
T  33632232 gttaaaaagtttaaaatagaaattta-tattgaaacttgtacatttaatattaaatataaaacttttgaataaa 33632304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 381
Target Start/End: Original strand, 44916681 - 44916738
Alignment:
Q  324 tttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    ||||||||| ||||||||||||  ||||||||||||| ||||||||| ||||||||||    
T  44916681 tttaaaatagaaattttgtattagaacttgcacatttaatattaaatataaaactttt 44916738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 388
Target Start/End: Complemental strand, 17409971 - 17409900
Alignment:
Q  317 taagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||| ||| ||||||||| |||||| |||||| ||||||||| ||||  |||||| ||||    
T  17409971 taagaagtttaaaatagaaactttgtattggaacttgtacatttaatattaaatataaattttttgaataaa 17409900  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 3085788 - 3085739
Alignment:
Q  321 aagtttaaaatataaattttgtattgaaacttgcacattttatattaaat 370  Q
    |||||||||||| ||||||||||||| |||||| |||||| |||||||||    
T  3085788 aagtttaaaatagaaattttgtattggaacttgtacatttaatattaaat 3085739  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 16069236 - 16069296
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaa 375  Q
    |||||||||||| ||||| || ||||||||||||| ||| |||||| ||||||||| ||||    
T  16069236 gttaagaagttttaaatagaatttttgtattgaaatttgtacatttaatattaaatataaa 16069296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 346
Target Start/End: Complemental strand, 19752159 - 19752129
Alignment:
Q  316 ttaagaagtttaaaatataaattttgtattg 346  Q
    |||||||||||||||||||||||||||||||    
T  19752159 ttaagaagtttaaaatataaattttgtattg 19752129  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 346
Target Start/End: Original strand, 19787647 - 19787677
Alignment:
Q  316 ttaagaagtttaaaatataaattttgtattg 346  Q
    |||||||||||||||||||||||||||||||    
T  19787647 ttaagaagtttaaaatataaattttgtattg 19787677  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 55814013 - 55813947
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    ||||| ||||||||||||  ||||||||||||||| ||| ||||| | |||||||| || |||||||    
T  55814013 gttaaaaagtttaaaataataattttgtattgaaatttgtacattctgtattaaatatataactttt 55813947  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 22130701 - 22130634
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttga 383  Q
    ||||| ||||||||||||||||||||  ||| ||| ||| | |||| ||||||||| ||||||||||||    
T  22130701 gttaaaaagtttaaaatataaatttt-aattaaaatttgaatatttaatattaaatataaaacttttga 22130634  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 381
Target Start/End: Complemental strand, 34941425 - 34941361
Alignment:
Q  317 taagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    ||||||||||||||||  ||||||| |||| |||||| ||||||| |||| ||| || |||||||    
T  34941425 taagaagtttaaaatagtaattttgcattggaacttgtacattttgtatttaatatataactttt 34941361  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 41970531 - 41970479
Alignment:
Q  316 ttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaa 368  Q
    |||| ||||||||||||  |||||||||||||||||| |  ||||||||||||    
T  41970531 ttaaaaagtttaaaatagtaattttgtattgaaacttacgtattttatattaa 41970479  T

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Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 30623475 - 30623402
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||    
T  30623475 gttaagaagtttaaaatagaaattttgtattgaaacttgtacatttgatattaaatataaaacttttgaataaa 30623402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 34692503 - 34692437
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||| ||||||||||    
T  34692503 gttaagaagtttaaaatagaaattttgtattggaacttgtacatttaatattaaatataaaactttt 34692437  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 4371988 - 4371916
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||  |||||||||||| ||||    
T  4371988 gttaagaagtttaaaatagaaattttgtattg-aacttgcacatttaatattaaagataaaacttttgaataaa 4371916  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 36967099 - 36967167
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttga 383  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  36967099 gttaagaagtttaaaatagaaactttgtattgaaacttgcacatttaatattaaatataaaacttttga 36967167  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 27874710 - 27874783
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||| |||||||||||| ||||    
T  27874710 gttaagaagtttaaaatacaaattttgtattggaacttgtacatttaatattaaatataaaacttttgaataaa 27874783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 28014887 - 28014960
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||| |||||||||||| ||||    
T  28014887 gttaagaagtttaaaatagaaattttgtattggaacttgtacatttaatattaaatataaaacttttgaataaa 28014960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 317 - 388
Target Start/End: Complemental strand, 38843851 - 38843780
Alignment:
Q  317 taagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||||||||||| ||||| |||||| |||||| ||||||||| |||||||||||| ||||    
T  38843851 taagaagtttaaaatataaattttttattggaacttgtacatttaatattaaatataaaacttttgaataaa 38843780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 315 - 370
Target Start/End: Original strand, 9580138 - 9580193
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaat 370  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  9580138 gttaagaagtttaaaatagaaattttgtattgaaacttgtacatttaatattaaat 9580193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 320 - 383
Target Start/End: Complemental strand, 30136925 - 30136862
Alignment:
Q  320 gaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttga 383  Q
    ||||||||||||| ||||||| ||||| ||||||||||||| ||||||||| ||||||||||||    
T  30136925 gaagtttaaaatagaaattttatattggaacttgcacatttaatattaaatataaaacttttga 30136862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 38212973 - 38213039
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    |||||||||||||||||| ||||||| |||||||||||| |||| | ||||||||| ||||||||||    
T  38212973 gttaagaagtttaaaatagaaattttatattgaaacttgtacatgtaatattaaatataaaactttt 38213039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 14391637 - 14391701
Alignment:
Q  324 tttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||| | |||||||||||| ||||    
T  14391637 tttaaaatataaattttgtattggaacttacacatttaatattaagtataaaacttttgaataaa 14391701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 16445766 - 16445837
Alignment:
Q  316 ttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||||||||||||||| ||||||||||||| ||| || |||||| ||||||||| |||||||||||| ||||    
T  16445766 ttaagaagtttaaaatagaaattttgtattggaac-tgtacatttaatattaaatataaaacttttgaataaa 16445837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 32186335 - 32186267
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttga 383  Q
    ||||| |||||||||||| ||||||| |||||||| || ||||||| ||||||||| ||||||||||||    
T  32186335 gttaataagtttaaaatagaaattttatattgaaatttacacatttaatattaaatataaaacttttga 32186267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 391
Target Start/End: Complemental strand, 297244 - 297168
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaaata 391  Q
    ||||||||||||||||||  || |||||||||||||||| ||||||| |||| ||| || ||||||||  |||||||    
T  297244 gttaagaagtttaaaataataactttgtattgaaacttgtacattttgtatttaatatataacttttggctaaaata 297168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 45006118 - 45006046
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||||| || |||||||||| ||| || |||| | ||||||||| |||||||||||| ||||    
T  45006118 gttaagaagtttaaaatagaa-ttttgtattggaacatgtacatctaatattaaatataaaacttttgaataaa 45006046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 41979904 - 41979948
Alignment:
Q  316 ttaagaagtttaaaatataaattttgtattgaaacttgcacattt 360  Q
    ||||||| ||||||||| || ||||||||||||||||||||||||    
T  41979904 ttaagaaatttaaaataaaatttttgtattgaaacttgcacattt 41979948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 12189619 - 12189690
Alignment:
Q  317 taagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||| ||| ||| ||||| |||||| |||||| ||||||||| ||||  |||||| ||||    
T  12189619 taagaagtttaaaatagaaactttatattggaacttgtacatttaatattaaatataaattttttgaataaa 12189690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 388
Target Start/End: Original strand, 12434047 - 12434118
Alignment:
Q  317 taagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||| ||| ||| ||||| |||||| |||||| ||||||||| ||||  |||||| ||||    
T  12434047 taagaagtttaaaatagaaactttatattggaacttgtacatttaatattaaatataaattttttgaataaa 12434118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 12132132 - 12132066
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    |||||||| |||||| ||  || ||||||||| |||||| |||||||||||||||| || |||||||    
T  12132132 gttaagaaatttaaagtagtaagtttgtattggaacttgaacattttatattaaatatataactttt 12132066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 370
Target Start/End: Original strand, 14961694 - 14961747
Alignment:
Q  317 taagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaat 370  Q
    ||||||||||||||||  |||||||||||| ||||||  ||||||| |||||||    
T  14961694 taagaagtttaaaatagtaattttgtattggaacttgtgcattttaaattaaat 14961747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 388
Target Start/End: Original strand, 34869560 - 34869624
Alignment:
Q  324 tttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||||||| |||||||||||||||| ||  || ||| ||| ||||| |||||||||||| ||||    
T  34869560 tttaaaatagaaattttgtattgaaatttatacttttaataataaatataaaacttttgaataaa 34869624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 54527735 - 54527808
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||| ||||||||||||||||||||||| |||||| |||||| ||||||||| |||||||||||| ||||    
T  54527735 gttaagaaatttaaaatataaattttgtattggaacttgtacatttaatattaaatataaaacttttgaataaa 54527808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 8165795 - 8165728
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttg 382  Q
    |||||||||||||||||||||||||||||||| |||||| |||||| ||||||| ||| |||||||||    
T  8165795 gttaagaagtttaaaatataaattttgtattggaacttgtacatttaatattaactcttaaacttttg 8165728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 42180201 - 42180135
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||| ||||||||||    
T  42180201 gttaagaagtttaaaataaaaattttgtattggaacttgtacatttaatattaaatataaaactttt 42180135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 380
Target Start/End: Complemental strand, 38786029 - 38785964
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttt 380  Q
    |||||||||||||||||| ||||||||||||| |||||| || ||||||||||||| |||||||||    
T  38786029 gttaagaagtttaaaatagaaattttgtattggaacttgtacgttttatattaaatataaaacttt 38785964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 50204552 - 50204484
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttga 383  Q
    |||||||||||||||||| ||||||||||||| ||| || |||||| ||||||||| ||||||||||||    
T  50204552 gttaagaagtttaaaatagaaattttgtattggaacctgtacatttaatattaaatataaaacttttga 50204484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 51567852 - 51567919
Alignment:
Q  321 aagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||| |||||||||||||||||||| ||||||  |||||||| |||||||||||| ||||    
T  51567852 aagtttaaaatagaaattttgtattgaaacttgtacatttactattaaatataaaacttttgaataaa 51567919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 23803075 - 23803148
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||||| |||||||| |||| |||||| | |||| ||||||||| |||||||||||| ||||    
T  23803075 gttaagaagtttaaaatagaaattttgcattggaacttgtatatttcatattaaatataaaacttttgaataaa 23803148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 51401589 - 51401528
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaa 376  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||| |||||    
T  51401589 gttaagaagtttaaaatagaaattttgtattggaacttgtacatttaatattaaatataaaa 51401528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 45983655 - 45983587
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttga 383  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||| ||||||||| ||  ||||||||    
T  45983655 gttaagaagtttaaaatagaaattttatattgaaacttgtacatttaatattaaatatattacttttga 45983587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 31318790 - 31318729
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaa 376  Q
    |||||||||||||| ||| |||||||| |||| |||||| |||||| ||||||||| |||||    
T  31318790 gttaagaagtttaagatagaaattttgcattggaacttgtacatttaatattaaatataaaa 31318729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 44609767 - 44609712
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaat 370  Q
    ||||| |||||||||||| ||||||| ||||| |||||||| |||| |||||||||    
T  44609767 gttaaaaagtttaaaataaaaattttatattggaacttgcatatttaatattaaat 44609712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 1569219 - 1569271
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatatta 367  Q
    ||||||||||||||||||  || ||||||||| ||||||  ||||||||||||    
T  1569219 gttaagaagtttaaaataataactttgtattggaacttgttcattttatatta 1569271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 36612760 - 36612833
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||||| |||||||||||| ||||||| |||||| ||||||||| |||||||||||| ||||    
T  36612760 gttaagaagtttaaaataaaaattttgtattaaaacttgtacatttaatattaaatataaaacttttgaataaa 36612833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 36620611 - 36620684
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||||| |||||||||||| ||||||| |||||| ||||||||| |||||||||||| ||||    
T  36620611 gttaagaagtttaaaataaaaattttgtattaaaacttgtacatttaatattaaatataaaacttttgaataaa 36620684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 43806509 - 43806436
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||| |||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||    
T  43806509 gttaaaaagtttaaaatagaaattttgtattgaaacttgtacatttaatattaaatataaaacttttgaataaa 43806436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 4576355 - 4576421
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    |||||||| ||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||||||    
T  4576355 gttaagaaatttaaaatagaaattttgtattgaaacttgtacatttaatattaaatataaaactttt 4576421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 370
Target Start/End: Original strand, 26003375 - 26003430
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaat 370  Q
    |||||||||||||||||| |||||||||||||||| ||| |||||| |||||||||    
T  26003375 gttaagaagtttaaaatagaaattttgtattgaaatttgtacatttgatattaaat 26003430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 26129135 - 26129208
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||| ||||||||| ||||||||||||| |  ||| |||||| ||||||||| |||||||||||| ||||    
T  26129135 gttaagaaatttaaaataaaaattttgtattggatattgtacatttaatattaaatataaaacttttgaataaa 26129208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 29142219 - 29142155
Alignment:
Q  319 agaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttga 383  Q
    |||||||||| ||| ||||||||||||  |||||| |||||| ||||||||| ||||| ||||||    
T  29142219 agaagtttaatatagaaattttgtattttaacttgtacatttaatattaaatataaaatttttga 29142155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 9747466 - 9747411
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaat 370  Q
    ||||||||||||||||||  |||||||| ||| ||||||  |||||||||||||||    
T  9747466 gttaagaagtttaaaatagtaattttgtcttggaacttgttcattttatattaaat 9747411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 370
Target Start/End: Original strand, 15411651 - 15411706
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaat 370  Q
    ||||||||||||||||||  || ||||| ||||||||||  |||||||||||||||    
T  15411651 gttaagaagtttaaaatagtaactttgtcttgaaacttgttcattttatattaaat 15411706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 16755118 - 16755052
Alignment:
Q  319 agaagtttaaaatataaattttgtattgaaacttgcacattttatat--taaatctaaaacttttga 383  Q
    |||||||||||||| ||||||| ||||| ||||||||||||| ||||   |||| ||||||||||||    
T  16755118 agaagtttaaaatagaaattttatattggaacttgcacatttaatatcaaaaatataaaacttttga 16755052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 370
Target Start/End: Original strand, 37471769 - 37471824
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaat 370  Q
    ||||||||||||||||||  || ||||| ||||||||||  |||||||||||||||    
T  37471769 gttaagaagtttaaaatagtaactttgtcttgaaacttgttcattttatattaaat 37471824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 44473541 - 44473609
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttga 383  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||| ||||||||| ||||||||||||    
T  44473541 gttaagaagtttaaaatagaaattttgtatttgaacttgcacatttaatattaaatataaaacttttga 44473609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 4969922 - 4969856
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||| ||||||||||    
T  4969922 gttaagaagtttaaaatagaaattttgtattggaacttgtacatttaatattaaatataaaactttt 4969856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 45501607 - 45501535
Alignment:
Q  316 ttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||| ||||||| |||| ||||    
T  45501607 ttaagaagtttaaaatagaaattttgtattggaacttgtacatttaatattaaatataaaactgttgaataaa 45501535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 370
Target Start/End: Original strand, 29398163 - 29398218
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaat 370  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||| |||||||||    
T  29398163 gttaagaagtttaaaatagaaattttgtattggaacttgtacatttaatattaaat 29398218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 26037242 - 26037176
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||| |||| |||| ||| ||||||    
T  26037242 gttaagaagtttaaaatagaaattttgtattggaacttgtacatttaatatcaaatataagactttt 26037176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 47707913 - 47707979
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    ||||||||||||||||||  ||||||| ||||||||||  ||||||| |||||||| || |||||||    
T  47707913 gttaagaagtttaaaatagtaattttgaattgaaacttatacattttgtattaaatatataactttt 47707979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 29692569 - 29692642
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||||| |||||| ||||| ||||||||||| || |||| ||   |||||||||||| ||||    
T  29692569 gttaagaagtttaaaatagaaatttggtattaaaacttgcacaattaatatcaaggataaaacttttgaataaa 29692642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 36032572 - 36032645
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||| ||||||||| ||||||||||||| | |||  |||||| ||||||||| ||||| |||||| ||||    
T  36032572 gttaagaaatttaaaataaaaattttgtattggatcttatacatttgatattaaatataaaatttttgaataaa 36032645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 35512874 - 35512806
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttga 383  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||| ||||||||||||    
T  35512874 gttaagaagtttaaaatagaaattttatattggaacttgcacatttaatattaaatataaaacttttga 35512806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 38812889 - 38812816
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||||||||| |||||| ||||||| |||||||||||| |||||| ||||||||| |||||||||||| ||||    
T  38812889 gttaagaagttcaaaatagaaattttatattgaaacttgtacatttaatattaaatataaaacttttgaataaa 38812816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 13322025 - 13321957
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttga 383  Q
    |||||||||||||||||| ||||||||||||| || ||| |||||| ||||||||| ||||||||||||    
T  13322025 gttaagaagtttaaaatagaaattttgtattggaatttgtacatttaatattaaatataaaacttttga 13321957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 6180335 - 6180269
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    |||||||||||||||||| ||||||| ||||| |||||| |||||| ||||||||| ||||||||||    
T  6180335 gttaagaagtttaaaatagaaattttatattggaacttgtacatttaatattaaatataaaactttt 6180269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 7824887 - 7824960
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||| |||||||||||| |||||||||| ||||| ||| |||||| ||||||||| |||||||||||| ||||    
T  7824887 gttaaaaagtttaaaataaaaattttgtaatgaaatttgtacatttaatattaaatataaaacttttgaataaa 7824960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 28016329 - 28016266
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaact 378  Q
    |||||||| ||||||||||||||||||||||| |||||| || ||| ||||||||| |||||||    
T  28016329 gttaagaattttaaaatataaattttgtattggaacttgtacttttaatattaaatataaaact 28016266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 23808583 - 23808510
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||| ||||| ||||||||||||| |||||  |||||| ||||||||| | |||||||||| ||||    
T  23808583 gttaagaagttttaaatagaaattttgtattggaacttatacatttaatattaaatatcaaacttttgaataaa 23808510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 39310815 - 39310888
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||| |||||||||||| ||||||||||||| || || ||||||| ||||||| | |||||||||||| ||||    
T  39310815 gttaaaaagtttaaaatagaaattttgtattggaattttcacatttaatattaagtataaaacttttgaataaa 39310888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 388
Target Start/End: Complemental strand, 22167482 - 22167411
Alignment:
Q  317 taagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||||||||| ||| ||||||||| |||||| |||||| ||||||||| ||||  |||||| ||||    
T  22167482 taagaagtttaaaatagaaactttgtattggaacttgtacatttaatattaaatataaattttttgaataaa 22167411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 376
Target Start/End: Complemental strand, 22331768 - 22331711
Alignment:
Q  319 agaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaa 376  Q
    |||||||||||||| ||||||||||||| |||||| ||| || ||||||||| |||||    
T  22331768 agaagtttaaaatagaaattttgtattggaacttgtacaattaatattaaatataaaa 22331711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 381
Target Start/End: Complemental strand, 25956793 - 25956732
Alignment:
Q  320 gaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    ||||||||||||| |||||||||| ||||| ||  |||||| ||||||||| ||||||||||    
T  25956793 gaagtttaaaatagaaattttgtactgaaatttatacatttaatattaaatataaaactttt 25956732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 388
Target Start/End: Complemental strand, 26978189 - 26978124
Alignment:
Q  323 gtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    |||||||||| || ||||||||||||||||| | |||| ||||||||| ||||| |||||| ||||    
T  26978189 gtttaaaataaaatttttgtattgaaacttgtatatttaatattaaatataaaatttttgaataaa 26978124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 4607624 - 4607562
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaac 377  Q
    |||||||| |||| |||| ||||||||||||| |||||| |||||| ||||||| | ||||||    
T  4607624 gttaagaaatttataatagaaattttgtattggaacttgtacatttaatattaagtgtaaaac 4607562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 23576443 - 23576509
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    |||||||| |||||||||  || |||| ||||||||||| ||||||| |||||||| || |||||||    
T  23576443 gttaagaaatttaaaatagtaactttgcattgaaacttgaacattttgtattaaatatataactttt 23576509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 25532358 - 25532292
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    ||||| |||||||||| | |||||||||||| ||| ||  |||||| ||||||||| ||||||||||    
T  25532358 gttaaaaagtttaaaaaagaaattttgtattaaaatttatacatttaatattaaatataaaactttt 25532292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 370
Target Start/End: Original strand, 3168095 - 3168152
Alignment:
Q  313 acgttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaat 370  Q
    ||||||| |||||||||||| || ||| |||||| |||||| |||||| |||||||||    
T  3168095 acgttaaaaagtttaaaatagaattttagtattggaacttgtacatttaatattaaat 3168152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 51920460 - 51920533
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||| || ||||||||| ||||||| |||| ||| ||| | |||| ||||||||| |||||||||||| ||||    
T  51920460 gttaataaatttaaaatagaaattttatattaaaatttgtatatttaatattaaatataaaacttttgaataaa 51920533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 388
Target Start/End: Complemental strand, 21036769 - 21036705
Alignment:
Q  324 tttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||||||| ||||||| |||||||||||| | |||| |||||| || ||||| |||||| ||||    
T  21036769 tttaaaataaaaattttatattgaaacttgtatatttaatattatatataaaatttttgaataaa 21036705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 381
Target Start/End: Complemental strand, 3398369 - 3398303
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||| ||||||||||    
T  3398369 gttaagaagtttaaaatagaaattttgtattggaacttgtacatttaatattaaatataaaactttt 3398303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 18841734 - 18841807
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||| |||||||||||| |||||||||||||||| ||| |||||| ||||||||| |||||||||||| ||||    
T  18841734 gttaaaaagtttaaaatagaaattttgtattgaaatttgtacatttaatattaaatataaaacttttgaataaa 18841807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 26265073 - 26265139
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    |||||||||||||||||| || ||||||||||||||||| | |||| ||||||||| ||||||||||    
T  26265073 gttaagaagtttaaaatagaagttttgtattgaaacttgtatatttaatattaaatataaaactttt 26265139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 383
Target Start/End: Complemental strand, 40980521 - 40980454
Alignment:
Q  316 ttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttga 383  Q
    |||| |||||||||||| |||||||||||||||| || ||||| | ||||||||| ||||||||||||    
T  40980521 ttaaaaagtttaaaatagaaattttgtattgaaaattacacatataatattaaatataaaacttttga 40980454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 370
Target Start/End: Original strand, 23995445 - 23995500
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaat 370  Q
    ||||||||||||||||||  |||||| |||||||||||| ||||||| ||||||||    
T  23995445 gttaagaagtttaaaatagtaattttatattgaaacttgtacattttgtattaaat 23995500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 370
Target Start/End: Original strand, 36474659 - 36474713
Alignment:
Q  316 ttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaat 370  Q
    |||| |||||||||||| |||||||||||||||||||| | |||| |||||||||    
T  36474659 ttaaaaagtttaaaatagaaattttgtattgaaacttgtatatttaatattaaat 36474713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 39047257 - 39047311
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaa 369  Q
    |||||||||||||||||| |||||||||||||||| ||  |||||| ||||||||    
T  39047257 gttaagaagtttaaaataaaaattttgtattgaaatttatacatttaatattaaa 39047311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 16883640 - 16883712
Alignment:
Q  316 ttaagaagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaacttttgagtaaa 388  Q
    ||||||||||||||||| ||||||||||||  |||||| | |||| ||||||||| ||||  |||||| ||||    
T  16883640 ttaagaagtttaaaatagaaattttgtatttgaacttgtaaatttaatattaaatataaattttttgaataaa 16883712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 13693 - 13753
Alignment:
Q  321 aagtttaaaatataaattttgtattgaaacttgcacattttatattaaatctaaaactttt 381  Q
    |||||||||||| ||||||||||||| |||||| |||||  ||||||||| ||||||||||    
T  13693 aagtttaaaatagaaattttgtattggaacttgtacattaaatattaaatataaaactttt 13753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 352
Target Start/End: Complemental strand, 41131 - 41094
Alignment:
Q  315 gttaagaagtttaaaatataaattttgtattgaaactt 352  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  41131 gttaagaagtttaaaataataattttgtattgaaactt 41094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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