View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9631_low_8 (Length: 378)
Name: NF9631_low_8
Description: NF9631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9631_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 43815714 - 43815355
Alignment:
| Q |
1 |
acagagaaggcagatatatatgcttttggtattttggttactgaaattgtttgtgggaaaaataacggtgtttttccacaaggttcaaatttggtactcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43815714 |
acagagaaggcagatatatatgcttttggtattttggttactgaaattgtttgtgggaaaaataacggtgtttttccacaaggttcaaatttggtactcc |
43815615 |
T |
|
| Q |
101 |
ataatgtaagatttacactcactcaagccttaaataacggtgttttgtcattaatgaattttgttagcagctaataaaatgttcatgtcatcacttgatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43815614 |
ataatgtaagatttacactcactcaagccttaaataacggtgttttgtcgttaatgaattttgttagcagctaataaaatgttcatgtcatcacttgatc |
43815515 |
T |
|
| Q |
201 |
aggtatggaagaattacaaggcaaacaatatcacaacatcaattgatcctgctcttcatggaaaatttgaggtagaagaagcatcaaatgctctacaagc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43815514 |
aggtatggaagaattacaaggcaaacaatatcacaacatcaattgatcctgctcttcatggaaaatttgaggtagaagaagcatcaaatgctctacaagc |
43815415 |
T |
|
| Q |
301 |
tgcacttctttgtacacaatcatctcctacccaaagaccatccatgtcagaagtagttca |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43815414 |
tgcacttctttgtacacaatcatctcctacccaaagaccatccatgtcagaagtagttca |
43815355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University