View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9632_low_11 (Length: 238)
Name: NF9632_low_11
Description: NF9632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9632_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 7110398 - 7110188
Alignment:
| Q |
1 |
ctcttaatcatactatttgcattcacgg---ctagagagactatagctattattaacaataacgtgcaggctccaactctaccaatcttgcttcgccata |
97 |
Q |
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| T |
7110398 |
ctcttaatcatactacttgcattcgcggtggctagagagactgtagcta------acaataaggtgcaggctccaactctaccaatcttgcttcgccata |
7110305 |
T |
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| Q |
98 |
caacagtttatattatcaatatggtgaaggctccaaatccaacacccttgactcttcgttgccaatctaaagatgacgatcttgaagaacaaacaatcca |
197 |
Q |
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| T |
7110304 |
caacagtttatattatcaataaggtgaaggctccaaatccaacacccttgactcttcgttgccaatctaaagatgacgatcttgaagaacatacaatcca |
7110205 |
T |
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| Q |
198 |
ttataaaacacaggttt |
214 |
Q |
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||||||||||||||||| |
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| T |
7110204 |
ttataaaacacaggttt |
7110188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 7116493 - 7116451
Alignment:
| Q |
5 |
taatcatactatttgcattcacggctagagagactatagctat |
47 |
Q |
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| T |
7116493 |
taatcatactagttgcattcgtggctagagagactatagctat |
7116451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 9036816 - 9036849
Alignment:
| Q |
144 |
cttgactcttcgttgccaatctaaagatgacgat |
177 |
Q |
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| T |
9036816 |
cttgactcttcgttgccaatctaaagatgacgat |
9036849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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