View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9632_low_3 (Length: 549)
Name: NF9632_low_3
Description: NF9632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9632_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 204 - 535
Target Start/End: Complemental strand, 6704461 - 6704128
Alignment:
| Q |
204 |
cataatgcattgttttgagttgaacctaactgaaccatgttaaaactaatttataaatgggagaaatgcgtctatctataaatacatatttaagttcgca |
303 |
Q |
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| T |
6704461 |
cataatgcattactttgagttgaacctaactcaaccattttaaaactaatttgtaaatgtgaggaatgcgtctatctataaatacatatttaagttcgca |
6704362 |
T |
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| Q |
304 |
acattcaacatgggaccatgatattcttttatcattatctatattttcttttaaaaatatctaccacctctttcatatttgccatcttcctct--nnnnn |
401 |
Q |
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| T |
6704361 |
acattcaacatgggaccatgatattcttttatcattatctatattttcttttaaaaatatctaccacctctttcatattcgccatcttcctctaaaaaaa |
6704262 |
T |
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| Q |
402 |
nntgtcattgatttctaaccaaattacatgataggagatgttcttcctttcatcaattcttgaaacatctcagcacaaaaacaatacacaattcaataca |
501 |
Q |
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| T |
6704261 |
aatgtcattgatttctaaccaaattacatgataggagatgttcttcctttcatcaattcttgaaacatctcagcacacaaacattacacaattcgataca |
6704162 |
T |
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| Q |
502 |
ctcttttatactatgtctaagcatacatatatat |
535 |
Q |
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| T |
6704161 |
ctcttttatactatgtctaagcatacatatatat |
6704128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 6704665 - 6704515
Alignment:
| Q |
1 |
aattatgtgacttctactacatagggcattaggtttgtgtattaagtttggtggaagtggaattcatgtattatcaagttaggtgtagtgtaactattca |
100 |
Q |
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| T |
6704665 |
aattatgtgacttctactacatagggcattaggtttgtgtattaagtttggtggaagtggaattcatgtattatcaagttaggtgtagtgtaactataca |
6704566 |
T |
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| Q |
101 |
aaaacaaaaacttataagttaaagagatataataaatttcttctcataggg |
151 |
Q |
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| T |
6704565 |
aaaacaaaaacttataagttaaagagatataataaatttcttctcataggg |
6704515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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