View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9632_low_4 (Length: 471)
Name: NF9632_low_4
Description: NF9632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9632_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 56 - 448
Target Start/End: Complemental strand, 371777 - 371366
Alignment:
| Q |
56 |
ccaaccatatattatatagtcacattaatgtatatgtctcatatgacaaata---taatttagccaagcttgtagatgcagcaaca-------------- |
138 |
Q |
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| T |
371777 |
ccaaccatatattatatagtcacattaatgtctatgtctcatatgacaaatagtataatttagccaagcttgtagatgcagcaatattaattgttgaata |
371678 |
T |
|
| Q |
139 |
gcaaggttggatcgatagaagaagaatggcgaatcagcttggaaatctggtggaatcaataaagtcaaaggtgaagtcaacgttgaagatgaagaaagga |
238 |
Q |
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| T |
371677 |
gcaaggttggatcgatagaagaa---tggcgaatcaacttggaaatctggtggaatcaataaagtcaaaggtgaagtcaacgttgaagatgaagaaagga |
371581 |
T |
|
| Q |
239 |
aagaagccatacataaagatggacaagagtgcaagtgttaaggttgagattcgaagcagaaaagctcgtaagcttattgaaaagaccttgaaagctgctg |
338 |
Q |
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| T |
371580 |
aagaagccatacataaagatggacaagagtgcaagtgttaaggttgagattcgaagcagaaaagctcgtaagcttattgaaaagaccttgaaagctgctg |
371481 |
T |
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| Q |
339 |
ataataatattccacccaccaattaagcacaacctcaccatataat---------ttcaatgttcatttccaatctcaagtcaatcaacatgtatatact |
429 |
Q |
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| T |
371480 |
ataataatattccccccacc----aagcacaacctcaccatataatttcttattcttcaatgttcatttccaatctcaagtcaatcaacatgtatatact |
371385 |
T |
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| Q |
430 |
ttgtgttgtgtgttaatta |
448 |
Q |
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| T |
371384 |
ttgtgttgtgtgttaatta |
371366 |
T |
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