View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9632_low_5 (Length: 362)
Name: NF9632_low_5
Description: NF9632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9632_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 22472934 - 22472605
Alignment:
| Q |
19 |
cctttccattctgatctgttgcatgtattctagtgagttgttgtcaagttttgtttgttttgatttgtttagtaatggatcagttttatgcgtgggattc |
118 |
Q |
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| T |
22472934 |
cctttccattctgatctgttgcatgtattctagtgagttgttgtcaagttttgtttgttttgatttgtttagtaatggatcagttttatgcgtgggattc |
22472835 |
T |
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| Q |
119 |
actacatttggagcggctcttaaacagtggcattttcaggaattatgcaacggattggtctgcccgttacctaaagcacaaaaaaccgtgacatattcaa |
218 |
Q |
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| T |
22472834 |
actacatttggagcggctcttaaacagtggcattttcaggaattatgcaacggattggtctgcccgttacctaaagcacaaaaaaccgtgacatattcaa |
22472735 |
T |
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| Q |
219 |
taggcaacggccgtatatttgtaaaatcgtggcctaaacgtttaggcaacggttattgggctactagccacgattttcggtcgttgcctaaagcgaaaaa |
318 |
Q |
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| T |
22472734 |
taggcaacggccgtatatttgtaaaatcgtggcctaaacgtttaggcaacggttattgggctactagccacgattttcggtcgttgcctaaagcgaaaaa |
22472635 |
T |
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| Q |
319 |
tgttgtagtgaatgaagattgtgatgtcca |
348 |
Q |
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| T |
22472634 |
tgttgtagtgaatgaagattgtgaagtcca |
22472605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 328
Target Start/End: Complemental strand, 32974724 - 32974636
Alignment:
| Q |
240 |
taaaatcgtggcctaaacgtttaggcaacggttattgggctactagccacgattttcggtcgttgcctaaagcga-aaaatgttgtagtg |
328 |
Q |
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| T |
32974724 |
taaagtcgtggcctaatcgtt-aggcaacggttattgggcttctaaccacaatttttggtcgttgcctaaagcgaaaaaatgttgtagtg |
32974636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 24482487 - 24482520
Alignment:
| Q |
299 |
tcgttgcctaaagcgaaaaatgttgtagtgaatg |
332 |
Q |
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| T |
24482487 |
tcgttgcctaaagcaaaaaatgttgtagtgaatg |
24482520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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