View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9632_low_6 (Length: 310)
Name: NF9632_low_6
Description: NF9632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9632_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 27775339 - 27775048
Alignment:
| Q |
1 |
caaatgttatttcagcatatgagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgattagagataataattgt |
100 |
Q |
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| T |
27775339 |
caaatgttattccagcatatgagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgattagagataataattgt |
27775240 |
T |
|
| Q |
101 |
gatggatatagatgcaattaattctaaaataacaaactaaactttcaagacaaaacataaaaggtgggagacaatacatgtttaagctgcagaagaattg |
200 |
Q |
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| T |
27775239 |
gatggatatagatgcaattaattctaaaataacaaactaaactttaaagacaaaacataaaaggtgggagacaatacatgtttaagctgcagaagaattg |
27775140 |
T |
|
| Q |
201 |
ctgcttttttgccttccaataaagttgtgatggcatttatcttccttatatgttcagcaagagctcccatagctgaagttccatgtcttttt |
292 |
Q |
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| T |
27775139 |
ttgcttttttgccttccaataaagttgtgatggcatttatcttccttatatgttcagcaagagctcccatagctgaagttccatctcttttt |
27775048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 27764453 - 27764322
Alignment:
| Q |
21 |
gagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgattagagataataattgtgatggatatagatgcaatta |
120 |
Q |
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| T |
27764453 |
gagctcaacggaataggctaaaagattatttcagcatcttgattatttagatgttaagtaagattagagatattaatagtgatgaattgagatgcaatca |
27764354 |
T |
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| Q |
121 |
attctaaaataacaaactaaactttcaagaca |
152 |
Q |
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| T |
27764353 |
attctaaaataccaaaccaaactttcaagaca |
27764322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 27799814 - 27799689
Alignment:
| Q |
40 |
aaaagattatttcagcatcttgattatttagatgt-----taagtatgattagagataataattgtgatggatatagatgcaattaattctaaaataaca |
134 |
Q |
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||||||||| || ||||||||||||||||||||| | ||||||||||||||| |||| | ||| || |||||||||||||||||||||| || |
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| T |
27799814 |
aaaagattagtttagcatcttgattatttagatggagtaattagtatgattagagatgataacagagatagactaagatgcaattaattctaaaatacca |
27799715 |
T |
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| Q |
135 |
aactaaactttcaagacaaaacataa |
160 |
Q |
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| T |
27799714 |
aactaaactttcaagagaaaacataa |
27799689 |
T |
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