View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9634_high_1 (Length: 242)
Name: NF9634_high_1
Description: NF9634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9634_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 31027586 - 31027819
Alignment:
| Q |
1 |
cttaccagcgaacctagtccgaataacttgacctatgttcttgagattaaatcaggtaatgttattctttcagctggttacaaaactccacagatttatt |
100 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
31027586 |
cttaccagtgaacctagtccaaataacttgacctatgttcttgagatcaaatcaggtaatgttattctttcagctggttacaaaactccacaaacatatt |
31027685 |
T |
|
| Q |
101 |
ggactatgctgaaggataatcgtaaaataatcgataaggtcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacag |
200 |
Q |
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||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31027686 |
ggactatgcagaaggataaccgtaaaataatagataaggtcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacaa |
31027785 |
T |
|
| Q |
201 |
taagtctttgttatggcaattcattttctctgct |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
31027786 |
taagtctttgttatggcaattcattttctctgct |
31027819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 33806392 - 33806161
Alignment:
| Q |
1 |
cttaccagcgaacctagtccgaataacttgacctatgttcttgagattaaatcaggtaatgttattctttcagctggttacaaaactccacagatttatt |
100 |
Q |
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|||||||| ||||||||| | |||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||| ||||| |
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| T |
33806392 |
cttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttatt |
33806293 |
T |
|
| Q |
101 |
ggactatgctgaaggataatcgtaaaataatcgataaggtcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacag |
200 |
Q |
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||||||||| ||| ||||| |||||||| | ||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||| |
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| T |
33806292 |
ggactatgcagaatgataaccgtaaaatcgttgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaa |
33806193 |
T |
|
| Q |
201 |
taagtctttgttatggcaattcattttctctg |
232 |
Q |
| |
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|| ||||||||||||| ||||||||||||||| |
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| T |
33806192 |
taggtctttgttatggaaattcattttctctg |
33806161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 33811912 - 33812143
Alignment:
| Q |
1 |
cttaccagcgaacctagtccgaataacttgacctatgttcttgagattaaatcaggtaatgttattctttcagctggttacaaaactccacagatttatt |
100 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||| ||||| |
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| T |
33811912 |
cttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttatt |
33812011 |
T |
|
| Q |
101 |
ggactatgctgaaggataatcgtaaaataatcgataaggtcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacag |
200 |
Q |
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|
||||||||| ||| ||||| |||||||| | ||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||| |
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| T |
33812012 |
ggactatgcagaatgataaccgtaaaatcgttgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaa |
33812111 |
T |
|
| Q |
201 |
taagtctttgttatggcaattcattttctctg |
232 |
Q |
| |
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|| ||||||||||||| ||||||||||||||| |
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| T |
33812112 |
taggtctttgttatggaaattcattttctctg |
33812143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 33801910 - 33801679
Alignment:
| Q |
1 |
cttaccagcgaacctagtccgaataacttgacctatgttcttgagattaaatcaggtaatgttattctttcagctggttacaaaactccacagatttatt |
100 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||| ||||| |
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| T |
33801910 |
cttaccagtgaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttatt |
33801811 |
T |
|
| Q |
101 |
ggactatgctgaaggataatcgtaaaataatcgataaggtcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacag |
200 |
Q |
| |
|
||||||||| ||| ||||| ||||||| || | ||| || |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33801810 |
ggactatgcagaatgataaccgtaaaacgattaacaagaatggtgatgttgtggcttttgcaaatctcagtgataattcttggaggttctatgataacaa |
33801711 |
T |
|
| Q |
201 |
taagtctttgttatggcaattcattttctctg |
232 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
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|
| T |
33801710 |
taagtctttgttatggcaattcattgtctctg |
33801679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 49462562 - 49462784
Alignment:
| Q |
10 |
gaacctagtccgaataacttgacctatgttcttgagattaaatcaggtaatgttattctttcagctggttacaaaactccacagatttattggactatgc |
109 |
Q |
| |
|
||||||||| | ||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||||||| |||| ||||||| ||||||||||||||| |
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| T |
49462562 |
gaacctagttcaaataatttgacctatgttcttgagattaaatctggtaatgttgttctttctgctggttttaaaattccacaggtttattggactatgc |
49462661 |
T |
|
| Q |
110 |
tgaaggataatcgtaaaataatcgataaggtcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacagtaagtcttt |
209 |
Q |
| |
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| ||||||| | |||| || ||||||| || |||||||||| | || ||||| ||||||||||||||||| || |||||| ||| |||||||| |
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| T |
49462662 |
aggaggataacaggaaaaccattgataaggatggtcatgttgtggtttcggcgaatcttagtgacaattcttggagattttatgatgacaagaagtcttt |
49462761 |
T |
|
| Q |
210 |
gttatggcaattcattttctctg |
232 |
Q |
| |
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||| ||||||||||||||||||| |
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| T |
49462762 |
gttgtggcaattcattttctctg |
49462784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 7815191 - 7815117
Alignment:
| Q |
16 |
agtccgaataacttgacctatgttcttgagattaaatcaggtaatgttattctttcagctggttacaaaactcca |
90 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||| ||||| ||||||||||| ||||||||| ||| |||||||||| |
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| T |
7815191 |
agtccaaataacttgacctttgttattgagatcaaatctggtaatgttatactttcagcttgtttcaaaactcca |
7815117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 10071400 - 10071262
Alignment:
| Q |
1 |
cttaccagcgaacctagtccgaataacttgacctatgttcttgagattaaatcaggtaatgttattctttcagctggttacaaaactccacagatttatt |
100 |
Q |
| |
|
||||| || ||||||| ||| ||||||| ||||||||||||| |||| ||||| ||||||| |||| |||| ||||||| ||||||||| || ||| | |
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|
| T |
10071400 |
cttacaagtgaacctattccaaataactcgacctatgttcttcagataaaatctggtaatgctattgtttctgctggtttggaaactccactgacttact |
10071301 |
T |
|
| Q |
101 |
ggactatgctgaaggataatcgtaaaataatcgataagg |
139 |
Q |
| |
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|||||||| ||||| ||| || |||| ||| ||||||| |
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|
| T |
10071300 |
agactatgcagaagggtaaccgcaaaacaattgataagg |
10071262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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