View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9634_high_2 (Length: 240)
Name: NF9634_high_2
Description: NF9634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9634_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 31027593 - 31027373
Alignment:
| Q |
3 |
ctggtaagtttcattccctctttgaaatcctgtgaaggcatcaaagtatcagttggataactaaaactttgccaaataactgtatcattgtcgtcggtac |
102 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
31027593 |
ctggtaagtttcattccctctttgaattcctgcgaaggcatcaaagtatcagttggataactaaaactttgccaaattaccgtatcattgtcgtcgttac |
31027494 |
T |
|
| Q |
103 |
caagcaaaaccaaatttccattgtcttgcaattccattgctttgctaattgtgtttgtagaccagatcacaattccatctttctccaaaaaggcatttcc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31027493 |
caagcaaaaccaaatttccattgtcttgcaattccattgctttgctaattgtgtttgtagaccagatcacaattccatctttctccaaaaaggcatttcc |
31027394 |
T |
|
| Q |
203 |
atttttatcaaacacgaaact |
223 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31027393 |
atttttatcaaacacgaaact |
31027373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 33811919 - 33811701
Alignment:
| Q |
3 |
ctggtaagtttcattccctctttgaaatcctgtgaaggcatcaaagtatcagttggataactaaaactttgccaaataactgtatcattgtcgtcggtac |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| ||| |
|
|
| T |
33811919 |
ctggtaagtttcattccctctttgaaatcctgtgaatgcatcaaagtatcagttggataactaaaactttgccaaattaccgtattattgtcgtccttac |
33811820 |
T |
|
| Q |
103 |
caagcaaaaccaaatttccattgtcttgcaattccattgctttgctaattgtgtttgtagaccagatcacaattccatctttctccaaaaaggcatttcc |
202 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||| |
|
|
| T |
33811819 |
caagcaaaaccaaatttccagtgttttgcaattccattgttttgctaattgtgtttgtagaccagatcacagttccatctttcagtaaataggcatttcc |
33811720 |
T |
|
| Q |
203 |
atttttatcaaacacgaaa |
221 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
33811719 |
ttttttatcaaactcgaaa |
33811701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 33801903 - 33802117
Alignment:
| Q |
3 |
ctggtaagtttcattccctctttgaaatcctgtgaaggcatcaaagtatcagttggataactaaaactttgccaaataactgtatcattgtcgtcggtac |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||| |||||||||| ||| |
|
|
| T |
33801903 |
ctggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaattaccgtattattgtcgtcgttac |
33802002 |
T |
|
| Q |
103 |
caagcaaaaccaaatttccattgtcttgcaattccattgctttgctaattgtgtttgtagaccagatcacaattccatctttctccaaaaaggcatttcc |
202 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||| |
|
|
| T |
33802003 |
caagcaaaaccaaatttccagtgtcttgcaattccattgttttgctaattgtgtttgtagaccagatcacagttccattcctctgtaaataggcatttcc |
33802102 |
T |
|
| Q |
203 |
atttttatcaaacac |
217 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33802103 |
ttttttatcaaacac |
33802117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 33806385 - 33806599
Alignment:
| Q |
3 |
ctggtaagtttcattccctctttgaaatcctgtgaaggcatcaaagtatcagttggataactaaaactttgccaaataactgtatcattgtcgtcggtac |
102 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||| |||||||||| ||| |
|
|
| T |
33806385 |
ctggtaagtttcattccctctttgaaatcttgtgaaggcattaaagtatcagttggataactaaaactttgccaaattaccgtattattgtcgtcgttac |
33806484 |
T |
|
| Q |
103 |
caagcaaaaccaaatttccattgtcttgcaattccattgctttgctaattgtgtttgtagaccagatcacaattccatctttctccaaaaaggcatttcc |
202 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||| |
|
|
| T |
33806485 |
caagcaaaaccaaatttccagtgtcttgcaattccattgttttgctaattgtgtttgtagaccagatcacagttccattcctctgtaaataggcatttcc |
33806584 |
T |
|
| Q |
203 |
atttttatcaaacac |
217 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33806585 |
ttttttatcaaacac |
33806599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 2529858 - 2529897
Alignment:
| Q |
102 |
ccaagcaaaaccaaatttccattgtcttgcaattccattg |
141 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
2529858 |
ccaagcaaaactaaatttccattgtcttgtaattccattg |
2529897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University