View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9635_1 (Length: 742)
Name: NF9635_1
Description: NF9635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9635_1 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 3e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 45087651 - 45087873
Alignment:
| Q |
20 |
gacatcatcatcttatgaccagggtcttggaattacggtgtttgggattgcctacatgtttgtccatgatggattggttcataagagattccctgtgggt |
119 |
Q |
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| T |
45087651 |
gacatcctcatcttatgaccagggtcttggaattacggtgtttgggattgcctacatgtttgtccatgatggattggttcataagagattccctgtgggt |
45087750 |
T |
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| Q |
120 |
cctattgccaacgtgccctacttcacaagagttgctgctgctcaccaagtagtgctcaatatatttttaca-nnnnnnnnnagcaaaataaacaaaggaa |
218 |
Q |
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| T |
45087751 |
cctattgccaacgtgccctacttcacaagagttgctgctgctcaccaagtagtgctcaatatatttttacattttttttttagcaaaataaacaaaggaa |
45087850 |
T |
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| Q |
219 |
aatataagtgccatgtgtttgtg |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
45087851 |
aatataagtgccatgtgtttgtg |
45087873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 520 - 714
Target Start/End: Original strand, 45088116 - 45088311
Alignment:
| Q |
520 |
aactggtaatcttgtattactagctgagtggtacttgggacaaaattctactatataactaaaatgttcatttcattgaactttcgtgagattatataag |
619 |
Q |
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| T |
45088116 |
aactggtaatcttgtattactagctgagtagtacttgggacaaaattctactatataactaaaatgttcatttcattgaactttcgtgagattatataat |
45088215 |
T |
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| Q |
620 |
tttactcgctatatatgtgttaattacttcaaaattttaatgtgctcgtagccaaatttgga-ttattttaacacattgcatggcgacatatggtg |
714 |
Q |
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| T |
45088216 |
tttactcgctatatatgtgttaattacttcaaaattttaatgtgctcgtagccaaatttggatttattttaacacattgcatggcaacatatggtg |
45088311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 310 - 472
Target Start/End: Original strand, 45087942 - 45088104
Alignment:
| Q |
310 |
gcagctccaccattcggacaaatttaaaggggtgccatatggactctttttaggaccaaaggtcagccacattcacattccctcttcctggnnnnnnngg |
409 |
Q |
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| T |
45087942 |
gcagctccaccattcggacaaatttaaaggggtgccatatggactctttttaggaccaaaggtcagccacattcacattccctcttcctggtttttttgg |
45088041 |
T |
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| Q |
410 |
ttcattaaagtattttagacttgtnnnnnnntaaaattaagtagtttagatgaatagtaatta |
472 |
Q |
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| T |
45088042 |
ttcattgaagtattttagacttgtaaaaaaataaaattaagtagtttagatgaatagtaatta |
45088104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 17495318 - 17495187
Alignment:
| Q |
39 |
cagggtcttggaattacggtgtttgggattgcctacatgtttgtccatgatggattggttcataagagattccctgtgggtcctattgccaacgtgccct |
138 |
Q |
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| T |
17495318 |
cagggtcttggaattacggtatttgggatggcctacatgtttgtacatgatggtttggttcataggagattctcagtgggacccattgccaatgtgccct |
17495219 |
T |
|
| Q |
139 |
acttcacaagagttgctgctgctcaccaagta |
170 |
Q |
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| T |
17495218 |
atttcagaagggtagctgcagcccacaaagta |
17495187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 372
Target Start/End: Complemental strand, 17495047 - 17494987
Alignment:
| Q |
312 |
agctccaccattcggacaaatttaaaggggtgccatatggactctttttaggaccaaaggt |
372 |
Q |
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| T |
17495047 |
agcttcaccattcagacaaattcgaaggggtgccatatgggctgtttttgggaccaaaggt |
17494987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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