View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9635_2 (Length: 530)
Name: NF9635_2
Description: NF9635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9635_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Complemental strand, 43552915 - 43552388
Alignment:
| Q |
1 |
cctctttatctgtagttattgttcttgttagtatcgttccatttagaagaaaaccacaaacattattgttgatcattgctcacaaggttatgtgggtagc |
100 |
Q |
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| T |
43552915 |
cctctttatctgtagttattgttcttgttagtatcgttccatttagaagaaaaccacaaacattattgttgatcattgctcacaaggttatgtgggtagc |
43552816 |
T |
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| Q |
101 |
tgtggccttcatggcaactggctatgttgcagccacatgggtgattttgccacataatcaagggatgcagtggctatctgttttgctactagcacttggt |
200 |
Q |
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| T |
43552815 |
tgtggccttcatggcaactggctatgttgcagccacatgggtgattttgccacataatcaagggatgcagtggctatctgttttgctactagcacttggt |
43552716 |
T |
|
| Q |
201 |
ggtggctccctaggcacaatcttcattggtcttagtgtgatgctagttgaacacagccttaggaaatccaagtggagaaagaaaagaaaggaaattgggg |
300 |
Q |
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| T |
43552715 |
ggtggctccctaggcacaatattcattggtcttagtgtgatgctagttgaacacagccttaggaaatccaagtggagaaagaaaagaaaggaaattgggg |
43552616 |
T |
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| Q |
301 |
atggagctgctgaatcagataaggaaagtgaaaattcagattttcaaagctcttatctacagggttaccattcatattgattannnnnnnggctcctaaa |
400 |
Q |
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| T |
43552615 |
atggagctgctgaatcagataaggaaagtgaaaattcagattttcaaagctcttatctacagggttaccattcatattgattatttttttggctcctaaa |
43552516 |
T |
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| Q |
401 |
ttgaaaatattaagtgctatgtgtaaaaaacttgtacattaatatcaatgttagttatgtatattccaaaatatttcctaaaactatttcacaaaccaga |
500 |
Q |
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| T |
43552515 |
ttgaaaatattaagtgc--tgtgtaaaaaacttgtacattaatatcaatgttagttatgtatattccaaaatatttcctaaaactatttcacaaaccaga |
43552418 |
T |
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| Q |
501 |
atcagaacgaagaaattctagcatgctata |
530 |
Q |
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| T |
43552417 |
atcagaacgaagaaattctagcatgctata |
43552388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 43548917 - 43548473
Alignment:
| Q |
1 |
cctctttatctgtagttattgttcttgttagtatcgttccatttagaagaaaaccacaaacattattgttgatcattgctcacaaggttatgtgggtagc |
100 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || | |||| |||||||||||||||||||||||| || |
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| T |
43548917 |
cctctttatctgtggttattgttcttgttagtatcattccatttagaagaaaaccacaaacaatactattgaccattgctcacaaggttatgtgggttgc |
43548818 |
T |
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| Q |
101 |
tgtggccttcatggcaactggctatgttgcagccacatgggtgattttgccacataatcaagggatgcagtggctatctgttttgctactagcacttggt |
200 |
Q |
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|||||| || |||| |||||| ||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| |
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| T |
43548817 |
tgtggcatttatgggaactggttatgttgcagctacatgggtgattttgccacataatcaagagatgcaatggctatctgttgtgctactagcacttggc |
43548718 |
T |
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| Q |
201 |
ggtggctccctaggcacaatcttcattggtcttagtgtgatgctagttgaacacagccttaggaaatccaagtggagaaagaaaagaaaggaaattgggg |
300 |
Q |
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||||||| |||||||| || |||||| |||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||| || | |
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| T |
43548717 |
ggtggctttctaggcacgatattcattagtcttagtgtgatgcttgttgaacactggcttaggaaatccagttggagaaagaaaagaaaggaaagcggag |
43548618 |
T |
|
| Q |
301 |
atggagctgctgaatcagataaggaaagtgaaaattcagattttcaaagctcttatctacagggttaccattcatattgattannnnnnnggctcctaaa |
400 |
Q |
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| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||| |
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| T |
43548617 |
acggaactgctgaatcagataaggaaagtgaagattcagattttcaaagctcttatctacagggttatcattcatattgattaatttgttggctcttaaa |
43548518 |
T |
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| Q |
401 |
ttgaaaatattaagtgctatgtgtaaaaaacttgtacattaatat |
445 |
Q |
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||||||||||| || ||||||||| |||||||||||||| |||| |
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| T |
43548517 |
atgaaaatattatgttctatgtgtagaaaacttgtacattcatat |
43548473 |
T |
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