View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9635_3 (Length: 522)
Name: NF9635_3
Description: NF9635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9635_3 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 7e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 4605078 - 4605228
Alignment:
| Q |
20 |
agaacctgtgtgctagaggttgcaatgttgtttcttagagtaacttgtgtgacaaggcaatgaaaactagccaacattttgtctgggattgtacatttat |
119 |
Q |
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| T |
4605078 |
agaatctgtgtgctagaggttgcaatgttgtttcttagagtaacttgtgtgacaaggcaatgaaaactagccaacattttgtctgggattatacatttat |
4605177 |
T |
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| Q |
120 |
gaaaaattgttagggctggcttgcttctactcataatatttctattgacac |
170 |
Q |
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| T |
4605178 |
gaaaaattgttagggctggcttgcttctactcataatatttctattgacac |
4605228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 43458117 - 43458216
Alignment:
| Q |
144 |
ttctactcataatatttctattgacacttcttcttttgatgttgtttgggatatttgtaaaagattttattttagtctcctcaatataaaactgtcatta |
243 |
Q |
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| T |
43458117 |
ttctactcttagtattgttattgacacttcttctattgatgttgttctggatatttgtaaaa-----tatatttgtctcctcaatgtaaaattatcatta |
43458211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 43458281 - 43458333
Alignment:
| Q |
278 |
gataacaagatcatttcttggaa-tcaaactctcatatggtgatctctaatac |
329 |
Q |
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| T |
43458281 |
gataacaagatcatttcttagaaatcgacctctcatatggtgatctctgatac |
43458333 |
T |
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