View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9635_4 (Length: 330)
Name: NF9635_4
Description: NF9635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9635_4 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 166 - 330
Target Start/End: Complemental strand, 10298251 - 10298087
Alignment:
| Q |
166 |
aaagtggtgagcattgaatgccaaatttagactaaattcagttcttactggattttcgcgactccgaaactcatcatgatcatttccaagaataggtgca |
265 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10298251 |
aaagtagtgagcattgaatgccaaatttagactaaattcagttcttactggattttcgcgactccgaaactcatcatgatcatttccaagaataggtgca |
10298152 |
T |
|
| Q |
266 |
gttaaattatggacaacaagttttgcttgcgcagcttctaagagcttatattcttcccttcatac |
330 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10298151 |
gtcaaattatggacaacaagttttgcttgcgcagcttctaagagcttatattcttcccttcatac |
10298087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 10298640 - 10298486
Alignment:
| Q |
16 |
gatggaactgcatgaaagatccgtattatatattgactctgtcttatcatcccgtctcaatnnnnnnnttctttgtattgaaatgaaatactcatctcta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10298640 |
gatggaactgcatgaaagatccgtattatatattgactctgtcttatcatcccgtctcaataaaaaaattctttgtattgaaatgaaatactcatctcta |
10298541 |
T |
|
| Q |
116 |
ggaaatgcacaaaatgcttttcctttttgaaagaatttaatataggtgtgaaagt |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10298540 |
ggaaatgcacaaaatgcttttcctttttgaaagaatttaatataggtgtgaaagt |
10298486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 205 - 318
Target Start/End: Original strand, 43789923 - 43790036
Alignment:
| Q |
205 |
agttcttactggattttcgcgactccgaaactcatcatgatcatttccaagaataggtgcagttaaattatggacaacaagttttgcttgcgcagcttct |
304 |
Q |
| |
|
|||||||||||||||||| || || |||||||||| ||||||||||||||||| ||||||||| |||| ||||||| ||||| |||||||| |||||||| |
|
|
| T |
43789923 |
agttcttactggattttcacggctgcgaaactcattatgatcatttccaagaacaggtgcagtcaaatgatggacagcaagtcttgcttgcacagcttct |
43790022 |
T |
|
| Q |
305 |
aagagcttatattc |
318 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
43790023 |
aagagctcatattc |
43790036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University