View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9635_low_1 (Length: 534)

Name: NF9635_low_1
Description: NF9635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9635_low_1
NF9635_low_1
[»] chr1 (4 HSPs)
chr1 (422-515)||(49713207-49713300)
chr1 (422-515)||(49655685-49655778)
chr1 (216-340)||(18655503-18655627)
chr1 (275-337)||(9850028-9850090)
[»] chr6 (9 HSPs)
chr6 (191-340)||(13562201-13562356)
chr6 (191-340)||(13561334-13561489)
chr6 (212-339)||(10673666-10673793)
chr6 (62-141)||(9928083-9928172)
chr6 (228-338)||(25439055-25439165)
chr6 (266-340)||(24318050-24318124)
chr6 (96-131)||(27439180-27439215)
chr6 (275-340)||(27108170-27108234)
chr6 (275-340)||(27149967-27150031)
[»] chr5 (12 HSPs)
chr5 (212-340)||(38603682-38603810)
chr5 (212-340)||(42962079-42962207)
chr5 (270-340)||(39050744-39050814)
chr5 (275-340)||(8358224-8358289)
chr5 (228-340)||(42963163-42963275)
chr5 (191-340)||(39051578-39051732)
chr5 (270-340)||(5163716-5163786)
chr5 (192-340)||(38602718-38602873)
chr5 (96-137)||(38473221-38473262)
chr5 (275-340)||(8359409-8359474)
chr5 (257-340)||(301416-301499)
chr5 (244-318)||(4904280-4904355)
[»] chr4 (10 HSPs)
chr4 (212-340)||(31204610-31204738)
chr4 (213-340)||(21569306-21569433)
chr4 (212-340)||(21570355-21570483)
chr4 (212-340)||(31205641-31205769)
chr4 (275-340)||(54823253-54823318)
chr4 (266-332)||(44219014-44219080)
chr4 (275-337)||(54822437-54822499)
chr4 (279-340)||(44217629-44217690)
chr4 (244-340)||(47573608-47573704)
chr4 (269-340)||(42698650-42698721)
[»] chr2 (7 HSPs)
chr2 (191-340)||(38593087-38593241)
chr2 (191-340)||(38596683-38596837)
chr2 (213-340)||(10330762-10330888)
chr2 (213-340)||(371900-372027)
chr2 (191-340)||(38593956-38594107)
chr2 (191-340)||(38597552-38597703)
chr2 (212-332)||(370831-370951)
[»] chr3 (10 HSPs)
chr3 (212-340)||(50002469-50002597)
chr3 (212-340)||(50003155-50003283)
chr3 (212-340)||(21248189-21248317)
chr3 (212-339)||(27225490-27225617)
chr3 (213-334)||(5409400-5409521)
chr3 (219-339)||(27226478-27226598)
chr3 (275-340)||(55387641-55387706)
chr3 (212-318)||(45730714-45730820)
chr3 (213-338)||(5384479-5384604)
chr3 (270-340)||(21247292-21247362)
[»] chr7 (13 HSPs)
chr7 (213-340)||(23153563-23153690)
chr7 (212-340)||(35044675-35044804)
chr7 (212-340)||(36584837-36584965)
chr7 (212-332)||(47536782-47536902)
chr7 (213-340)||(47535715-47535842)
chr7 (226-340)||(43704398-43704512)
chr7 (224-340)||(35045838-35045954)
chr7 (212-340)||(40321125-40321253)
chr7 (212-328)||(42520289-42520405)
chr7 (212-340)||(42521190-42521318)
chr7 (270-339)||(40322225-40322295)
chr7 (212-340)||(43703109-43703237)
chr7 (242-318)||(40881168-40881245)
[»] chr8 (8 HSPs)
chr8 (212-340)||(41767096-41767224)
chr8 (216-340)||(44770550-44770674)
chr8 (269-340)||(43415957-43416028)
chr8 (212-326)||(44769749-44769862)
chr8 (212-340)||(12820031-12820158)
chr8 (279-340)||(43414437-43414498)
chr8 (265-340)||(23768471-23768545)
chr8 (244-340)||(9189450-9189546)
[»] scaffold0013 (2 HSPs)
scaffold0013 (212-341)||(32157-32285)
scaffold0013 (212-341)||(27886-28016)
[»] scaffold0041 (1 HSPs)
scaffold0041 (242-318)||(85038-85115)
[»] scaffold0003 (1 HSPs)
scaffold0003 (96-131)||(48147-48182)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 422 - 515
Target Start/End: Complemental strand, 49713300 - 49713207
Alignment:
Q  422 caaacctgtatcacactttgcaggatgaactctatcagtgcagtaacacctgaaactgtatacatctttatcaaagccacacctccctccagtg 515  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  49713300 caaacctgtatcacattttgcagaatgaactctatcagtgcagtaacacctgaaactgtatacatctttatcaaagccacaccttcctccagtg 49713207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 422 - 515
Target Start/End: Complemental strand, 49655778 - 49655685
Alignment:
Q  422 caaacctgtatcacactttgcaggatgaactctatcagtgcagtaacacctgaaactgtatacatctttatcaaagccacacctccctccagtg 515  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||    
T  49655778 caaacctgtatcacattttgcagaatgaactctatcagtgcagtaacacttgaaattgtatacatctttatcaaagccacaccttcctccagtg 49655685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 340
Target Start/End: Complemental strand, 18655627 - 18655503
Alignment:
Q  216 atacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaag 314  Q
    ||||||| |||||||| ||||||||||||| |||||||||| ||||||   ||   ||| |||||||||||| | |||||||||||| ||||||| ||||    
T  18655627 atacactattagatctaatggacctccttt-atccaacggtcttctttttaaggattttaaaattaataaaaaaggactaaattgatcattaaaacaaag 18655529  T
Q  315 ataaaggaccattttaaaacgtttaa 340  Q
    |||||  | |||||| ||||||||||    
T  18655528 ataaataaacattttgaaacgtttaa 18655503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 9850090 - 9850028
Alignment:
Q  275 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtt 337  Q
    |||||||||||||| ||  |||||||||| ||||| ||| ||||||||||||||| |||||||    
T  9850090 aaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgtt 9850028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 191 - 340
Target Start/End: Original strand, 13562201 - 13562356
Alignment:
Q  191 tgaagaaagtgatataaattaggtg------atacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaata 283  Q
    |||||||||||||||||||||||||      ||||||| |||||||||||||| ||||||| ||||||| || ||||||  |||  |||| |||||||||    
T  13562201 tgaagaaagtgatataaattaggtgttggtgatacactgttagatctgatggatctccttt-atccaacagtcttcttttttaggagtttaaaattaata 13562299  T
Q  284 aaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    ||||| ||| ||||| |||| ||||| ||||||||||||||||||| ||||||||||    
T  13562300 aaataggaccaaatttatgactaaaataaagataaaggaccattttgaaacgtttaa 13562356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 191 - 340
Target Start/End: Complemental strand, 13561489 - 13561334
Alignment:
Q  191 tgaagaaagtgatataaattaggtg------atacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaata 283  Q
    |||||||||||||||||||||||||      ||||||| ||||||||||||||||| |||| |||||||| | ||||||   ||  |||| |||||||||    
T  13561489 tgaagaaagtgatataaattaggtgttggtgatacactattagatctgatggaccttcttt-atccaacgatcttctttttgaggagtttaaaattaata 13561391  T
Q  284 aaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    ||||| ||| |||||||||| || || ||||||||| ||||||||| ||||||||||    
T  13561390 aaataggaccaaattgatgactataacaaagataaaagaccattttgaaacgtttaa 13561334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 212 - 339
Target Start/End: Complemental strand, 10673793 - 10673666
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    |||||||||| ||||||| ||||||||||||||| || ||||||| ||||||   | |||||| |||||||||||||| ||||||||||||||  ||||     
T  10673793 ggtgatacacctttagatatgatggacctccttt-attcaacggtcttctttttgaaaggtttaaaattaataaaataggactaaattgatgacgaaaac 10673695  T
Q  311 aaagataaaggaccattttaaaacgttta 339  Q
    ||| |||||||||||  || |||||||||    
T  10673694 aaacataaaggaccaaattgaaacgttta 10673666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 9928083 - 9928172
Alignment:
Q  62 atgaagaaattgatgatcatcatcatcatgttga----------tgttgatgatttctggatttaagaaattggaggtgtagtgatgaga 141  Q
    ||||||||||||||||| ||||||||||||||||          ||||||||||||||| |||| |||||||||||||||||||| ||||    
T  9928083 atgaagaaattgatgatgatcatcatcatgttgatgttgattgttgttgatgatttctgaattttagaaattggaggtgtagtgacgaga 9928172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 338
Target Start/End: Original strand, 25439055 - 25439165
Alignment:
Q  228 atctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccat 326  Q
    |||||||| ||||||||| |||||||||| ||||||   |||||||| |||||||||||||  ||| |||||||| || |||| ||||||||| |||||     
T  25439055 atctgatgaacctccttt-atccaacggtcttctttttaagaggtttaaaattaataaaattggaccaaattgataatgaaaacaaagataaaagaccaa 25439153  T
Q  327 tttaaaacgttt 338  Q
     || ||||||||    
T  25439154 attgaaacgttt 25439165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 24318050 - 24318124
Alignment:
Q  266 agaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    ||||||||||||||||||||||  ||  ||||||||||  |||| |||||||||||||||  |||||| ||||||    
T  24318050 agaggtttgaaattaataaaatgggatcaaattgatgacgaaaacaaagataaaggaccaaattaaaaagtttaa 24318124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 131
Target Start/End: Complemental strand, 27439215 - 27439180
Alignment:
Q  96 tgttgatgatttctggatttaagaaattggaggtgt 131  Q
    |||||| |||||||||||||||||||||||||||||    
T  27439215 tgttgacgatttctggatttaagaaattggaggtgt 27439180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 27108170 - 27108234
Alignment:
Q  275 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    |||||||||||||| |||||||| |||||| |||| |||||| |||| |||  |||||||||||||    
T  27108170 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtccaaattaaaacgtttaa 27108234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 27149967 - 27150031
Alignment:
Q  275 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    |||||||||||||| |||||||| |||||| |||| |||||| |||| |||  |||||||||||||    
T  27149967 aaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtccaaattaaaacgtttaa 27150031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 38603682 - 38603810
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||| ||||||  |||  |||| |||||||||||||| ||| |||||||||| |||||     
T  38603682 ggtgatacactattagatctgatggaccttcttt-atccaacggtcttcttttttaggagtttaaaattaataaaataggaccaaattgatgactaaaac 38603780  T
Q  311 aaagataaaggaccattttaaaacgtttaa 340  Q
    ||||||||||||||||||| ||| ||||||    
T  38603781 aaagataaaggaccattttgaaaagtttaa 38603810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 42962207 - 42962079
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||  |||||||| || |||||||||| |||||||||| ||||||   |||||||| |||||||||||||| ||| ||||||||||| ||||     
T  42962207 ggtgatacaccattagatcttatagacctccttt-atccaacggtcttctttttgagaggtttaaaattaataaaataggaccaaattgatgatgaaaac 42962109  T
Q  311 aaagataaaggaccattttaaaacgtttaa 340  Q
    ||||||||||||||| |||||| |||||||    
T  42962108 aaagataaaggaccaatttaaagcgtttaa 42962079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 39050814 - 39050744
Alignment:
Q  270 gtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    |||| |||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||| ||||||||||    
T  39050814 gtttaaaattaataaaatatgaccaaatttatgactaaaataaagataaaggaccattttgaaacgtttaa 39050744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 8358289 - 8358224
Alignment:
Q  275 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    |||||||||||||||||| ||| |||||| ||||| ||||||||| ||||||||||||||||||||    
T  8358289 aaattaataaaatatgaccaaaatgatgactaaaacaaagataaaagaccattttaaaacgtttaa 8358224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 340
Target Start/End: Original strand, 42963163 - 42963275
Alignment:
Q  228 atctgatggacctccttttatccaacggtt-tctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccat 326  Q
    |||||||||||||||||| ||||||||||  |||||   |||||||| |||||||||||||| || |||||||||||| |||| ||||||||| |||||     
T  42963163 atctgatggacctccttt-atccaacggtcatctttttgagaggtttaaaattaataaaataggattaaattgatgatgaaaacaaagataaatgaccaa 42963261  T
Q  327 tttaaaacgtttaa 340  Q
     || ||||||||||    
T  42963262 attgaaacgtttaa 42963275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 340
Target Start/End: Original strand, 39051578 - 39051732
Alignment:
Q  191 tgaagaaagtgatataaattaggtg------atacacttttagatctgatggacctccttttatccaacggtttctttcgtagaggtttgaaattaataa 284  Q
    |||||||| ||||||||||||||||      ||||||| ||||||||||||||||| |||| ||| | |||| | |||   ||  |||| ||||||||||    
T  39051578 tgaagaaaatgatataaattaggtgttgatgatacactattagatctgatggaccttcttt-atctagcggtctttttttgaggagtttaaaattaataa 39051676  T
Q  285 aatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    |||| ||  |||||||||| ||||| ||||||||||||||||||| |||| |||||    
T  39051677 aataggatcaaattgatgactaaaacaaagataaaggaccattttgaaacatttaa 39051732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 5163786 - 5163716
Alignment:
Q  270 gtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||||||||| |||||| |||| |||||    
T  5163786 gtttaaaattaataaaatatgaccaaattgataattaaaacaaagataaaggatcattttgaaacatttaa 5163716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 340
Target Start/End: Complemental strand, 38602873 - 38602718
Alignment:
Q  192 gaagaaagtgatataaatta------ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataa 284  Q
    ||||||||||||||||||||      ||||||||| | |||||||||||| |  || ||||||||||| || ||||||   ||  |||| ||||||||||    
T  38602873 gaagaaagtgatataaattaagtgttggtgatacattgttagatctgatgaatatc-ttttatccaactgtcttctttttgaggagtttaaaattaataa 38602775  T
Q  285 aatatgactaaattgatgattaaaagaaa-gataaaggaccattttaaaacgtttaa 340  Q
    |||||||| ||||| |||| ||||| ||| |||| ||||||||||||||||||||||    
T  38602774 aatatgaccaaatttatgactaaaataaaagatagaggaccattttaaaacgtttaa 38602718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 38473221 - 38473262
Alignment:
Q  96 tgttgatgatttctggatttaagaaattggaggtgtagtgat 137  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  38473221 tgttgatgatttctggatttaaaaaattggaggtgtagtgat 38473262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 8359409 - 8359474
Alignment:
Q  275 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    ||||| |||||||| ||| ||| |||||| ||||| ||||||||| |||||||||||||| |||||    
T  8359409 aaatttataaaataggaccaaaatgatgactaaaacaaagataaaagaccattttaaaacttttaa 8359474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 340
Target Start/End: Complemental strand, 301499 - 301416
Alignment:
Q  257 ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    |||||||  |||||||| |||||||||||||| ||  |||||||||  ||||| ||||| ||| || ||||||| |||||||||    
T  301499 ttctttctaagaggtttaaaattaataaaataggatcaaattgatggctaaaacaaagagaaaagatcattttataacgtttaa 301416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 318
Target Start/End: Complemental strand, 4904355 - 4904280
Alignment:
Q  244 tttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataa 318  Q
    ||||||||||||| ||||||  ||||  ||| |||||||||||||||||| |||| |||||| |||| ||||||||    
T  4904355 tttatccaacggtcttcttttttagaaatttaaaattaataaaatatgaccaaatcgatgatgaaaacaaagataa 4904280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 31204738 - 31204610
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||| ||||||   ||  |||| |||||||||||||| ||| ||||||||||||||||     
T  31204738 ggtgatacactgttagatctgatggacatccttt-atccaacggtcttctttttaaggagtttaaaattaataaaataggaccaaattgatgattaaaat 31204640  T
Q  311 aaagataaaggaccattttaaaacgtttaa 340  Q
    ||||||||| ||||||||| ||||||||||    
T  31204639 aaagataaatgaccattttgaaacgtttaa 31204610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 213 - 340
Target Start/End: Complemental strand, 21569433 - 21569306
Alignment:
Q  213 gtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaaga 311  Q
    |||||||||| |||||||||||||||||||||| |||||||||| ||||||   |||||||| ||||||||||||||||| ||||| |||||| |||| |    
T  21569433 gtgatacactgttagatctgatggacctccttt-atccaacggtcttctttttgagaggtttaaaattaataaaatatgattaaatagatgatgaaaaca 21569335  T
Q  312 aagataaaggaccattttaaaacgtttaa 340  Q
    |||||||| |||||  || ||||||||||    
T  21569334 aagataaatgaccaaattgaaacgtttaa 21569306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 21570355 - 21570483
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||  ||||||||||| |||||||||| |||||||||| ||||||   |||||||| |||||||||||||| ||  ||||||||||| ||||     
T  21570355 ggtgatacacgattagatctgatagacctccttt-atccaacggtcttctttttgagaggtttaaaattaataaaataggatcaaattgatgatgaaaac 21570453  T
Q  311 aaagataaaggaccattttaaaacgtttaa 340  Q
    ||||||||| |||||  || ||||||||||    
T  21570454 aaagataaatgaccaaattgaaacgtttaa 21570483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 31205641 - 31205769
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||  |||||||||||||| ||||||| ||||||  || ||||||   ||  |||| |||||||||||||||||| ||||| || |||||||     
T  31205641 ggtgatacaccgttagatctgatggatctccttt-atccaaatgtcttctttttaaggagtttaaaattaataaaatatgaccaaattaataattaaaac 31205739  T
Q  311 aaagataaaggaccattttaaaacgtttaa 340  Q
    ||||||||||||||||||| ||||||||||    
T  31205740 aaagataaaggaccattttgaaacgtttaa 31205769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 54823253 - 54823318
Alignment:
Q  275 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    |||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  54823253 aaattaataaaatatgatcaaattgatgactaaaacaaagataaaggaccattttaaaacgtttaa 54823318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 266 - 332
Target Start/End: Original strand, 44219014 - 44219080
Alignment:
Q  266 agaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaa 332  Q
    |||||||| |||| ||||||||| ||| ||||||||||| |||| ||||||||||||||| ||||||    
T  44219014 agaggtttaaaatcaataaaataggaccaaattgatgataaaaacaaagataaaggaccaatttaaa 44219080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 54822499 - 54822437
Alignment:
Q  275 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtt 337  Q
    |||||||||||||| ||  |||||||||| ||||| ||| ||||||||||||||| |||||||    
T  54822499 aaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgtt 54822437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 44217690 - 44217629
Alignment:
Q  279 taataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    |||||||||| ||| ||||||||||| |||| ||||||||| |||||  |||||||||||||    
T  44217690 taataaaataggaccaaattgatgatgaaaacaaagataaaagaccaaattaaaacgtttaa 44217629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 244 - 340
Target Start/End: Original strand, 47573608 - 47573704
Alignment:
Q  244 tttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    ||||||||||||| ||||||   |||| ||| |||||||||||||||||| |||| |||||  |||| |||||| ||||||||  |||||||||||||    
T  47573608 tttatccaacggtcttctttttcagagatttaaaattaataaaatatgaccaaatcgatgacaaaaacaaagat-aaggaccaaattaaaacgtttaa 47573704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 42698650 - 42698721
Alignment:
Q  269 ggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    ||||| |||| ||||||||  ||||||||||||||| |||| ||||||||| |||||  || ||||||||||    
T  42698650 ggtttaaaataaataaaatgggactaaattgatgatgaaaacaaagataaatgaccaaattgaaacgtttaa 42698721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 191 - 340
Target Start/End: Complemental strand, 38593241 - 38593087
Alignment:
Q  191 tgaagaaagtgatataaatta------ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaata 283  Q
    |||||||||||||||||||||      ||||||||||| |||||||||||||| |||  ||||||||||||| ||||||   ||  |||| |||||||||    
T  38593241 tgaagaaagtgatataaattaagtgttggtgatacactattagatctgatggatctc--tttatccaacggtcttctttttgaggagtttaaaattaata 38593144  T
Q  284 aaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    ||||| ||| |||||||||| ||||| ||||| ||||||||||||| ||||||||||    
T  38593143 aaataggaccaaattgatgactaaaacaaagacaaaggaccattttgaaacgtttaa 38593087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 191 - 340
Target Start/End: Complemental strand, 38596837 - 38596683
Alignment:
Q  191 tgaagaaagtgatataaatta------ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaata 283  Q
    |||||||||||||||||||||      ||||||||||| |||||||||||||| |||  ||||||||||||| ||||||   ||  |||| |||||||||    
T  38596837 tgaagaaagtgatataaattaagtgttggtgatacactattagatctgatggatctc--tttatccaacggtcttctttttgaggagtttaaaattaata 38596740  T
Q  284 aaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    ||||| ||| |||||||||| ||||| ||||| ||||||||||||| ||||||||||    
T  38596739 aaataggaccaaattgatgactaaaacaaagacaaaggaccattttgaaacgtttaa 38596683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 340
Target Start/End: Complemental strand, 10330888 - 10330762
Alignment:
Q  213 gtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaaga 311  Q
    |||||||||| ||||||||||| ||||||  |||||||||  || ||||||   || ||||| |||||||||||||| ||| ||||| |||  ||||| |    
T  10330888 gtgatacactgttagatctgatagacctc--tttatccaatagtcttctttttaaggggtttaaaattaataaaataggaccaaattaatggctaaaaca 10330791  T
Q  312 aagataaaggaccattttaaaacgtttaa 340  Q
    |||||||| ||||||||| ||||||||||    
T  10330790 aagataaatgaccattttgaaacgtttaa 10330762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 213 - 340
Target Start/End: Original strand, 371900 - 372027
Alignment:
Q  213 gtgatacacttttagatctgatggacctccttttatccaacggtt-tctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaaga 311  Q
    |||||||||  |||||||||||| ||||||||| ||||||| ||  |||||   |||||||| |||||||||||||| ||  ||||||||||| |||| |    
T  371900 gtgatacaccgttagatctgatgaacctccttt-atccaacagtcatctttttgagaggtttaaaattaataaaataggatcaaattgatgatgaaaaca 371998  T
Q  312 aagataaaggaccattttaaaacgtttaa 340  Q
    ||||||||||| ||  || ||||||||||    
T  371999 aagataaaggatcaaattgaaacgtttaa 372027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 191 - 340
Target Start/End: Original strand, 38593956 - 38594107
Alignment:
Q  191 tgaagaaagtgatataaattaggtg------atacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaata 283  Q
    |||||||||||||||||||||||||      ||||||    |||||||||||||||||||| |||||||  | ||||||   | | |||| |||||||||    
T  38593956 tgaagaaagtgatataaattaggtgttggtgatacac----agatctgatggacctccttt-atccaacaatcttctttttgataagtttaaaattaata 38594050  T
Q  284 aaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    ||||| ||| ||||| |||  ||||| ||||||||| ||||||||||||||||||||    
T  38594051 aaataggaccaaatttatgtctaaaataaagataaatgaccattttaaaacgtttaa 38594107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 191 - 340
Target Start/End: Original strand, 38597552 - 38597703
Alignment:
Q  191 tgaagaaagtgatataaattaggtg------atacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaata 283  Q
    |||||||||||||||||||||||||      ||||||    |||||||||||||||||||| |||||||  | ||||||   | | |||| |||||||||    
T  38597552 tgaagaaagtgatataaattaggtgttggtgatacac----agatctgatggacctccttt-atccaacaatcttctttttgataagtttaaaattaata 38597646  T
Q  284 aaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    ||||| ||| ||||| |||  ||||| ||||||||| ||||||||||||||||||||    
T  38597647 aaataggaccaaatttatgtctaaaataaagataaatgaccattttaaaacgtttaa 38597703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 332
Target Start/End: Complemental strand, 370951 - 370831
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||  |||||| |||| |||||| ||| |||||||||| || |||  ||||||||| |||| ||||||||| ||  ||||||||||| ||||     
T  370951 ggtgatacaccattagatttgatagacctcattt-atccaacggtcttattttttagaggtttaaaatcaataaaataggatcaaattgatgataaaaac 370853  T
Q  311 aaagataaaggaccattttaaa 332  Q
    ||||||||| ||||| ||||||    
T  370852 aaagataaatgaccaatttaaa 370831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 50002597 - 50002469
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||  |||||||||||||| ||||||| |||||||| | |||||| | ||  |||| |||||||||||||| ||||||||||||||||||||     
T  50002597 ggtgatacaccgttagatctgatggatctccttt-atccaacgatcttcttttgaaggagtttaaaattaataaaataggactaaattgatgattaaaac 50002499  T
Q  311 aaagataaaggaccattttaaaacgtttaa 340  Q
    ||| ||||||||||||||  ||||||||||    
T  50002498 aaacataaaggaccatttcgaaacgtttaa 50002469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 50003155 - 50003283
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||  ||||||||||| |||||||||| |||||||||| || |||   ||  |||| |||||||||||||| ||| ||||||||||||||||     
T  50003155 ggtgatacaccgttagatctgattgacctccttt-atccaacggtcttatttttaaggagtttaaaattaataaaataggaccaaattgatgattaaaac 50003253  T
Q  311 aaagataaaggaccattttaaaacgtttaa 340  Q
    ||| ||||||||||||||| ||||||||||    
T  50003254 aaacataaaggaccattttgaaacgtttaa 50003283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 21248189 - 21248317
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||  ||||||| |||||||||||||  ||||||| || ||||||   |||||||| |||||||||||||| ||| ||| | |||| |||||     
T  21248189 ggtgatacaccgttagatccgatggacctcctta-atccaacagtcttctttttaagaggtttaaaattaataaaataggaccaaaataatgactaaaac 21248287  T
Q  311 aaagataaaggaccattttaaaacgtttaa 340  Q
    |||||||| |||||||||| ||||||||||    
T  21248288 aaagataagggaccattttgaaacgtttaa 21248317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 339
Target Start/End: Complemental strand, 27225617 - 27225490
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    |||||||||| |||||||||||||||| | |||| |||||||||| ||||||   | |||||| |||||||||||||| ||||||||||||||  ||||     
T  27225617 ggtgatacacctttagatctgatggactttcttt-atccaacggtcttctttttgaaaggtttaaaattaataaaataggactaaattgatgacgaaaac 27225519  T
Q  311 aaagataaaggaccattttaaaacgttta 339  Q
    ||| |||||| ||||  || |||||||||    
T  27225518 aaacataaagaaccaaattgaaacgttta 27225490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 5409521 - 5409400
Alignment:
Q  213 gtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaaga 311  Q
    |||||||||  ||| |||||||| ||||||||| |||||||||| ||||||   |||||||| |||||||||||||  ||  ||||||||||| |||| |    
T  5409521 gtgatacaccgttaaatctgatgaacctccttt-atccaacggtcttctttttaagaggtttaaaattaataaaattggatcaaattgatgatgaaaaca 5409423  T
Q  312 aagataaaggaccattttaaaac 334  Q
    ||||||||||||||  |||||||    
T  5409422 aagataaaggaccaaattaaaac 5409400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 339
Target Start/End: Original strand, 27226478 - 27226598
Alignment:
Q  219 cacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagata 317  Q
    |||| |||||||| ||||||||||||| |||||||| | ||||||   || ||||| |||||||||||||| ||| ||||||||||| |||| ||| |||    
T  27226478 cactgttagatcttatggacctccttt-atccaacgatcttctttttgaggggtttaaaattaataaaataggaccaaattgatgatgaaaacaaacata 27226576  T
Q  318 aaggaccattttaaaacgttta 339  Q
    ||||||||  || |||||||||    
T  27226577 aaggaccaaattgaaacgttta 27226598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 55387641 - 55387706
Alignment:
Q  275 aaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    |||| ||||||||||||| |||||||||||||||| ||||||||| || ||| |||||||||||||    
T  55387641 aaatcaataaaatatgaccaaattgatgattaaaacaaagataaaagatcatcttaaaacgtttaa 55387706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 318
Target Start/End: Complemental strand, 45730820 - 45730714
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||  |||||| ||||| || |||||| |||||||||| ||||||  ||  | ||| |||||||||||||| |||||||| |||||| ||||     
T  45730820 ggtgatacacggttagatatgatgaacttccttt-atccaacggtcttcttttttatggatttcaaattaataaaataggactaaatcgatgatgaaaac 45730722  T
Q  311 aaagataa 318  Q
    ||||||||    
T  45730721 aaagataa 45730714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 338
Target Start/End: Complemental strand, 5384604 - 5384479
Alignment:
Q  213 gtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaaga 311  Q
    |||||||||  ||| |||||||| ||||| ||| |||| ||||| ||||||   |||||||| |||||||||||||  ||| ||||||||| | |||| |    
T  5384604 gtgatacaccgttaaatctgatgaacctcattt-atcccacggtcttctttttaagaggtttaaaattaataaaattggaccaaattgatgttgaaaaca 5384506  T
Q  312 aagataaaggaccattttaaaacgttt 338  Q
    |||||| |||||||  || ||||||||    
T  5384505 aagatagaggaccaaattgaaacgttt 5384479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 21247362 - 21247292
Alignment:
Q  270 gtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    |||| ||||||||||||||  || ||| | |||| ||||| |||||||| |||||||||| ||||||||||    
T  21247362 gtttaaaattaataaaatagaaccaaaattatgactaaaacaaagataagggaccattttgaaacgtttaa 21247292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 340
Target Start/End: Original strand, 23153563 - 23153690
Alignment:
Q  213 gtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaaga 311  Q
    |||||||||  |||||||||||||||||||||| ||||||| || ||||||   |||||||| ||||||||||||||||| |||||||||||| |||| |    
T  23153563 gtgatacaccgttagatctgatggacctccttt-atccaacagtcttctttttgagaggtttaaaattaataaaatatgattaaattgatgataaaaaca 23153661  T
Q  312 aagataaaggaccattttaaaacgtttaa 340  Q
    |||||||| |||||  || ||||||||||    
T  23153662 aagataaatgaccaaattgaaacgtttaa 23153690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 35044804 - 35044675
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaata-tgactaaattgatgattaaaa 309  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||| ||||||   ||   ||| |||||||||||| | |||| ||||||||||||||||    
T  35044804 ggtgatacactcttagatctaatggacctccttt-atccaacggtcttctttttaaggattttaaaattaataaaaaaatgaccaaattgatgattaaaa 35044706  T
Q  310 gaaagataaaggaccattttaaaacgtttaa 340  Q
     |||||||||||| |||||| ||||||||||    
T  35044705 caaagataaaggatcattttgaaacgtttaa 35044675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 36584837 - 36584965
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    |||||| |||| |||||| | ||||||||||||| |||||||||| ||| ||   || | ||| |||||||||||||||||| |||||||||| |||||     
T  36584837 ggtgatccactcttagatataatggacctccttt-atccaacggtcttcgttttaagggctttaaaattaataaaatatgaccaaattgatgactaaaat 36584935  T
Q  311 aaagataaaggaccattttaaaacgtttaa 340  Q
    ||||||||||||||||||| ||| ||||||    
T  36584936 aaagataaaggaccattttgaaatgtttaa 36584965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 212 - 332
Target Start/End: Original strand, 47536782 - 47536902
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||  ||||||||||| |||||| |||||||||||||| ||||||   ||| |||| |||| ||||||||| ||| ||||||||||| ||||     
T  47536782 ggtgatacaccattagatctgatagacctc-ttttatccaacggtcttctttttgagaagtttaaaatcaataaaataggaccaaattgatgataaaaac 47536880  T
Q  311 aaagataaaggaccattttaaa 332  Q
    ||||||||||||||| ||||||    
T  47536881 aaagataaaggaccaatttaaa 47536902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 213 - 340
Target Start/End: Complemental strand, 47535842 - 47535715
Alignment:
Q  213 gtgatacacttttagatctgatggacctccttttatccaacggtt-tctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaaga 311  Q
    |||||||||  |||||||||||||| ||||||| ||||||| ||  |||||   |||||||| |||||||||||||| ||| ||||||||||| |||| |    
T  47535842 gtgatacaccgttagatctgatggatctccttt-atccaacagtcatctttttgagaggtttaaaattaataaaataggaccaaattgatgataaaaaca 47535744  T
Q  312 aagataaaggaccattttaaaacgtttaa 340  Q
    ||||||||||||||  || ||||||||||    
T  47535743 aagataaaggaccaaattgaaacgtttaa 47535715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 340
Target Start/End: Original strand, 43704398 - 43704512
Alignment:
Q  226 agatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggacc 324  Q
    ||||| |||||| ||||||| |||||||||| ||||||   || ||||| |||||||||||||| || |||| |||||| ||||| ||||||||||||||    
T  43704398 agatccgatggatctccttt-atccaacggtcttctttttaaggggtttaaaattaataaaataggattaaaatgatgactaaaacaaagataaaggacc 43704496  T
Q  325 attttaaaacgtttaa 340  Q
    ||||| ||||||||||    
T  43704497 attttgaaacgtttaa 43704512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 224 - 340
Target Start/End: Original strand, 35045838 - 35045954
Alignment:
Q  224 ttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaagga 322  Q
    ||||||| |||||| ||||||| |||||||||| ||||||   ||  |||| |||||||||||||| ||  |||||||||||||||| ||||||||| ||    
T  35045838 ttagatccgatggatctccttt-atccaacggtattctttttaaggagtttaaaattaataaaataggatcaaattgatgattaaaacaaagataaatga 35045936  T
Q  323 ccattttaaaacgtttaa 340  Q
    ||||||| ||||||||||    
T  35045937 ccattttgaaacgtttaa 35045954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 40321253 - 40321125
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||| ||||||   |    ||| |||||||||||| | | | ||||||||||||||||     
T  40321253 ggtgatacactgttagatctaatggacctccttt-atccaacggtcttctttttaatgattttaaaattaataaaaaaggcccaaattgatgattaaaac 40321155  T
Q  311 aaagataaaggaccattttaaaacgtttaa 340  Q
    |||||||||||| |||||| ||||||||||    
T  40321154 aaagataaaggatcattttgaaacgtttaa 40321125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 42520405 - 42520289
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggttt-ctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||  ||||||||||| |||||||||| |||||||||| | ||||   |  ||||| ||||| |||||||||||| |||||||||| |||||     
T  42520405 ggtgatacaccgttagatctgatagacctccttt-atccaacggtctactttttaatgggtttaaaattgataaaatatgacaaaattgatgactaaaac 42520307  T
Q  311 aaagataaaggaccattt 328  Q
    ||||||| ||||||||||    
T  42520306 aaagatacaggaccattt 42520289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 42521190 - 42521318
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||| || |||   ||   ||| ||||| |||||||| ||| |||||||||| |||||     
T  42521190 ggtgatacactgttagatccgatggacctccttt-atccaacggtcttatttttaaggattttaaaattgataaaataggaccaaattgatgactaaaac 42521288  T
Q  311 aaagataaaggaccattttaaaacgtttaa 340  Q
    |||| || ||||||||||| ||||||||||    
T  42521289 aaaggtagaggaccattttgaaacgtttaa 42521318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 40322225 - 40322295
Alignment:
Q  270 gtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccatttt-aaaacgttta 339  Q
    |||| |||||||||||||| ||  |||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  40322225 gtttaaaattaataaaataggatcaaattgatgattaaaacaaagataaaagaccattttgaaaacgttta 40322295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 43703237 - 43703109
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||  ||||||| |||| ||||||||| |||||||||| ||||||   |||  ||| ||||||||||||||  || ||||||||||| |||      
T  43703237 ggtgatacaccgttagatccgatgcacctccttt-atccaacggtcttctttttaagaaatttaaaattaataaaatagtaccaaattgatgatgaaagc 43703139  T
Q  311 aaagataaaggaccattttaaaacgtttaa 340  Q
    | ||||||| |||||||||||||| |||||    
T  43703138 atagataaaagaccattttaaaacatttaa 43703109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 318
Target Start/End: Complemental strand, 40881245 - 40881168
Alignment:
Q  242 cttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataa 318  Q
    ||||||||||||||| ||||||  ||| | ||| |||||||||||||||||| ||||||||||  |||| ||||||||    
T  40881245 cttttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattgatgacaaaaataaagataa 40881168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 41767096 - 41767224
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||  ||||||| |||||||||||||  ||||||| || ||||||   |||||||| |||||||||||||| ||| ||| | |||| |||||     
T  41767096 ggtgatacaccgttagatccgatggacctcctta-atccaacagtcttctttttaagaggtttaaaattaataaaataggaccaaaataatgactaaaat 41767194  T
Q  311 aaagataaaggaccattttaaaacgtttaa 340  Q
    |||||||| |||||||||| ||||||||||    
T  41767195 aaagataagggaccattttgaaacgtttaa 41767224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 340
Target Start/End: Original strand, 44770550 - 44770674
Alignment:
Q  216 atacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaag 314  Q
    ||||||| ||||||| ||| |||||| ||| |||||||||| ||||||   || ||||| |||||||||||||| ||  |||||||||| ||||| ||||    
T  44770550 atacactgttagatccgatagacctcattt-atccaacggtcttctttttaaggggtttaaaattaataaaataggatcaaattgatgactaaaacaaag 44770648  T
Q  315 ataaaggaccattttaaaacgtttaa 340  Q
     ||||||||||||||||||| |||||    
T  44770649 ctaaaggaccattttaaaacatttaa 44770674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 43415957 - 43416028
Alignment:
Q  269 ggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    ||||| |||||||||||||  ||||||| |||||| ||||| ||||||||| ||||||||| ||||||||||    
T  43415957 ggtttaaaattaataaaatcggactaaaatgatgactaaaacaaagataaaagaccattttgaaacgtttaa 43416028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 326
Target Start/End: Complemental strand, 44769862 - 44769749
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||| |||||| ||||||||||||||  ||||||| || ||| ||   || | ||| |||||||||||||||||  |||||||||| |||||     
T  44769862 ggtgatacactgttagatatgatggacctcctt--atccaacagtcttcattttaagggttttaaaattaataaaatatgatcaaattgatgactaaaac 44769765  T
Q  311 aaagataaaggaccat 326  Q
    ||||||||| ||||||    
T  44769764 aaagataaatgaccat 44769749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 12820031 - 12820158
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||||  |||||| ||||| ||||||||| |||||||||| ||||||   |||| ||| |||||||||||||| ||| |||| || ||  ||||     
T  12820031 ggtgatacacagttagatatgatgaacctccttt-atccaacggtcttctttttgagagatttaaaattaataaaataggaccaaatcgacgacgaaaac 12820129  T
Q  311 aaagataaaggaccattttaaaacgtttaa 340  Q
    |||||| ||||||||  |||||||||||||    
T  12820130 aaagat-aaggaccaaattaaaacgtttaa 12820158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 43414498 - 43414437
Alignment:
Q  279 taataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    ||||||||||  || ||||||||||| |||| | ||||||||||||||||| ||||||||||    
T  43414498 taataaaatagtaccaaattgatgatgaaaacatagataaaggaccattttgaaacgtttaa 43414437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 340
Target Start/End: Original strand, 23768471 - 23768545
Alignment:
Q  265 tagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    ||||| ||| |||||||||||||| ||| ||||||||||  |||| |||||| |||||||| |||||||| |||||    
T  23768471 tagagatttaaaattaataaaataggaccaaattgatgacgaaaacaaagat-aaggaccaatttaaaacatttaa 23768545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 340
Target Start/End: Complemental strand, 9189546 - 9189450
Alignment:
Q  244 tttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataaaggaccattttaaaacgtttaa 340  Q
    ||||||||||||| ||||||  ||| | ||| |||||||||||||||||| ||||||||||   ||| |||||| ||||||||  || ||||||||||    
T  9189546 tttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattgatgacagaaacaaagat-aaggaccaaattgaaacgtttaa 9189450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 212 - 341
Target Start/End: Complemental strand, 32285 - 32157
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaag 310  Q
    ||||||||| | ||||||||||||| ||||  |||||||||  || |||||||  || ||||| |||||||||||||| ||| |||||||||  |||||     
T  32285 ggtgatacattgttagatctgatgggcctc--tttatccaatagtcttctttctaaggggtttaaaattaataaaataggaccaaattgatggctaaaac 32188  T
Q  311 aaagataaaggaccattttaaaacgtttaac 341  Q
    |||||||||  |||| |||||||||||||||    
T  32187 aaagataaataaccaatttaaaacgtttaac 32157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 341
Target Start/End: Complemental strand, 28016 - 27886
Alignment:
Q  212 ggtgatacacttttagatctgatggacctccttttatccaac---ggtttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaa 308  Q
    ||||||||||||||||||||||||||||||  |||||||||    |  ||||||   || | ||| |||||||||||||| ||| || ||||||  ||||    
T  28016 ggtgatacacttttagatctgatggacctc--tttatccaaaatagtcttctttttaagggatttaaaattaataaaataggaccaacttgatggctaaa 27919  T
Q  309 agaaagataaaggaccattttaaaacgtttaac 341  Q
    | ||||||||| ||||||||| |||||||||||    
T  27918 acaaagataaatgaccattttgaaacgtttaac 27886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 85038 - 85115
Alignment:
Q  242 cttttatccaacggt-ttctttcgtagaggtttgaaattaataaaatatgactaaattgatgattaaaagaaagataa 318  Q
    ||||||||||||||| ||||||  ||| | ||| |||||||||||||||||| ||||||||||  |||| ||||||||    
T  85038 cttttatccaacggtcttcttttttagggatttaaaattaataaaatatgaccaaattgatgacaaaaataaagataa 85115  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 48147 - 48182
Alignment:
Q  96 tgttgatgatttctggatttaagaaattggaggtgt 131  Q
    |||||| |||||||||||||||||||||||||||||    
T  48147 tgttgacgatttctggatttaagaaattggaggtgt 48182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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