View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9636_high_1 (Length: 282)
Name: NF9636_high_1
Description: NF9636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9636_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 9695944 - 9696211
Alignment:
| Q |
1 |
aagaagcgtaggagtaactgcaatagaataattttcattattataggttggaatgtaattgggaaactttttagatccaaagctgttttttgatgaacaa |
100 |
Q |
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| T |
9695944 |
aagaagcgtaggattaactgcaatagaataattttcattattataggttggaatgtaattgggaaactttttagatccaaagctgttttgcgatgaacaa |
9696043 |
T |
|
| Q |
101 |
acagtttttaggtttatattagcgcatagtttaagtgtagattcagcttcatgatctgtacttaaatcccacctttattattaatacagacttagtttgt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9696044 |
acagttgttaggtttatattagcgcatagtttaagtgtagattcagcttcatgatctgtacttaaatcccacctttattattaatacagactcagtttgt |
9696143 |
T |
|
| Q |
201 |
tatggtacattcttttgattatcttctaccaattgaatgctgttattcacgtgaagctatgttgtatgt |
269 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| |
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| T |
9696144 |
tatggtacattctgttgattatcttctaccaattgaatgctgttattca-gtgaagttatgttatatgt |
9696211 |
T |
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