View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9636_high_2 (Length: 260)

Name: NF9636_high_2
Description: NF9636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9636_high_2
NF9636_high_2
[»] chr6 (3 HSPs)
chr6 (17-251)||(7564011-7564246)
chr6 (49-84)||(34625743-34625778)
chr6 (49-97)||(6294538-6294586)
[»] chr5 (3 HSPs)
chr5 (50-96)||(28322251-28322297)
chr5 (49-96)||(9895156-9895203)
chr5 (49-84)||(40878405-40878440)
[»] chr4 (5 HSPs)
chr4 (49-95)||(9906783-9906829)
chr4 (49-84)||(32369927-32369962)
chr4 (50-96)||(18783987-18784033)
chr4 (54-91)||(27857943-27857980)
chr4 (49-81)||(12710012-12710044)
[»] chr8 (7 HSPs)
chr8 (49-86)||(2506191-2506228)
chr8 (49-97)||(3508061-3508109)
chr8 (49-81)||(10170404-10170436)
chr8 (49-84)||(29096955-29096990)
chr8 (49-96)||(33697144-33697191)
chr8 (49-81)||(2517116-2517148)
chr8 (49-81)||(34768337-34768369)
[»] chr3 (2 HSPs)
chr3 (49-84)||(36302002-36302037)
chr3 (49-84)||(49636841-49636876)
[»] chr2 (3 HSPs)
chr2 (49-84)||(5461184-5461219)
chr2 (49-91)||(15098113-15098155)
chr2 (50-84)||(32102875-32102909)
[»] chr7 (3 HSPs)
chr7 (49-91)||(23948401-23948443)
chr7 (49-81)||(28266483-28266515)
chr7 (49-93)||(32855363-32855407)
[»] chr1 (1 HSPs)
chr1 (46-84)||(3148156-3148194)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 7564246 - 7564011
Alignment:
Q  17 cacaaacacgacaccgacttgtccattcgagaaataatttgagaaaataaattaattgaatgtaatcatacgtgttggtgctacctaatttgagaactat 116  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7564246 cacaaacacgacactaacttgtccattcgagaaataatttgagaaaataaattaattgaatgtaatcatacgtgttggtgctacctaatttgagaactat 7564147  T
Q  117 cttggttacctagttcatgtgttacacaagacatgccaagccaataaccataacaccgtctatttggttaagtcggtcattgcctatcgacataacatca 216  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7564146 cttggttacctggttcatgtgttacacaagacatgccaagccaataaccataacaccgtctatttggttaagtcggtcattgcctatcgacataacatca 7564047  T
Q  217 tctaacacagtgttcctctcc-attgttccctttgc 251  Q
    ||||||||||||||||||||| ||||||||||||||    
T  7564046 tctaacacagtgttcctctccaattgttccctttgc 7564011  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 34625743 - 34625778
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatca 84  Q
    |||||||||||||||| |||||||||||||||||||    
T  34625743 aataatttgagaaaatgaattaattgaatgtaatca 34625778  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 6294586 - 6294538
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatcatacgtgttggtgc 97  Q
    |||||||||||||||| ||||||||||||| ||||  | ||||||||||    
T  6294586 aataatttgagaaaatgaattaattgaatgcaatcgcatgtgttggtgc 6294538  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 28322251 - 28322297
Alignment:
Q  50 ataatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 96  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||    
T  28322251 ataatttgagaaaatgaattaattgaatgtaatcacatgtgttggtg 28322297  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 9895156 - 9895203
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 96  Q
    |||||||||||||||||||||| ||||| ||||||| | |||||||||    
T  9895156 aataatttgagaaaataaattatttgaacgtaatcacatgtgttggtg 9895203  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 40878440 - 40878405
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatca 84  Q
    |||||||||||||| |||||||||||||||||||||    
T  40878440 aataatttgagaaactaaattaattgaatgtaatca 40878405  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 9906783 - 9906829
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatcatacgtgttggt 95  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||    
T  9906783 aataattagagaaaataaattaattgaatgtaatcatatatgttggt 9906829  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 32369962 - 32369927
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatca 84  Q
    |||||||||||||||| |||||||||||||||||||    
T  32369962 aataatttgagaaaatgaattaattgaatgtaatca 32369927  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 18783987 - 18784033
Alignment:
Q  50 ataatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 96  Q
    ||||||||||||||| || |||||||||||||| | |||||||||||    
T  18783987 ataatttgagaaaatgaagtaattgaatgtaattacacgtgttggtg 18784033  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 27857980 - 27857943
Alignment:
Q  54 tttgagaaaataaattaattgaatgtaatcatacgtgt 91  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  27857980 tttgagaaaattaattaattgaatgtaatcacacgtgt 27857943  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 12710012 - 12710044
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaa 81  Q
    |||||||||||||||||||||||||||| ||||    
T  12710012 aataatttgagaaaataaattaattgaacgtaa 12710044  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 2506191 - 2506228
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatcata 86  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  2506191 aataattagagaaaataaattaattgaatgtaatcata 2506228  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 3508061 - 3508109
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatcatacgtgttggtgc 97  Q
    ||||||||||||||||||  ||||| |||||||||||| ||||||||||    
T  3508061 aataatttgagaaaataacataattcaatgtaatcatatgtgttggtgc 3508109  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 10170436 - 10170404
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaa 81  Q
    |||||||||||||||||||||||||||||||||    
T  10170436 aataatttgagaaaataaattaattgaatgtaa 10170404  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 29096955 - 29096990
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatca 84  Q
    |||||||| |||||||||||||||||||||||||||    
T  29096955 aataatttaagaaaataaattaattgaatgtaatca 29096990  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 33697191 - 33697144
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatcatacgtgttggtg 96  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||| ||||    
T  33697191 aataatttgagaaaataaaataattgaatataaccatacgtgtcggtg 33697144  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 2517116 - 2517148
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaa 81  Q
    |||||||||||||||| ||||||||||||||||    
T  2517116 aataatttgagaaaatgaattaattgaatgtaa 2517148  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 34768369 - 34768337
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaa 81  Q
    |||| ||||||||||||||||||||||||||||    
T  34768369 aatagtttgagaaaataaattaattgaatgtaa 34768337  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 36302002 - 36302037
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatca 84  Q
    |||||| |||||||||||||||||||||||||||||    
T  36302002 aataatgtgagaaaataaattaattgaatgtaatca 36302037  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 49636876 - 49636841
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatca 84  Q
    |||||||||||||||| |||||||||||||||||||    
T  49636876 aataatttgagaaaatgaattaattgaatgtaatca 49636841  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 5461219 - 5461184
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatca 84  Q
    |||||||||||| |||||||||||||||||||||||    
T  5461219 aataatttgagataataaattaattgaatgtaatca 5461184  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 15098155 - 15098113
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatcatacgtgt 91  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||    
T  15098155 aataatttgagaaaaaaaattaattgaatgtaattataagtgt 15098113  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 32102909 - 32102875
Alignment:
Q  50 ataatttgagaaaataaattaattgaatgtaatca 84  Q
    |||||||||||||||||||||||||||| ||||||    
T  32102909 ataatttgagaaaataaattaattgaatataatca 32102875  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 23948401 - 23948443
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatcatacgtgt 91  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  23948401 aataatttgaaaaaatcaattaattgaatgtaatcatatgtgt 23948443  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 28266483 - 28266515
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaa 81  Q
    |||||||||||||||||||||||||| ||||||    
T  28266483 aataatttgagaaaataaattaattggatgtaa 28266515  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 32855363 - 32855407
Alignment:
Q  49 aataatttgagaaaataaattaattgaatgtaatcatacgtgttg 93  Q
    |||||||| ||||||| | ||||||||||||||||||| ||||||    
T  32855363 aataatttaagaaaatgatttaattgaatgtaatcatatgtgttg 32855407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 3148156 - 3148194
Alignment:
Q  46 agaaataatttgagaaaataaattaattgaatgtaatca 84  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  3148156 agaaataatttgagaaaataaattaatttaatataatca 3148194  T

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