View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9636_high_3 (Length: 229)

Name: NF9636_high_3
Description: NF9636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9636_high_3
NF9636_high_3
[»] chr5 (8 HSPs)
chr5 (17-214)||(1505522-1505719)
chr5 (22-214)||(1492718-1492910)
chr5 (23-214)||(1482744-1482935)
chr5 (23-214)||(1478550-1478741)
chr5 (46-214)||(1499814-1499982)
chr5 (43-214)||(1487241-1487412)
chr5 (67-143)||(1496087-1496163)
chr5 (61-214)||(1509712-1509855)
[»] chr7 (7 HSPs)
chr7 (23-214)||(46706368-46706559)
chr7 (24-214)||(5310949-5311139)
chr7 (17-214)||(5289077-5289274)
chr7 (24-214)||(5315663-5315853)
chr7 (24-214)||(5284860-5285050)
chr7 (24-214)||(5303048-5303238)
chr7 (172-214)||(32530388-32530430)
[»] chr1 (3 HSPs)
chr1 (17-214)||(44133324-44133521)
chr1 (17-214)||(44141746-44141943)
chr1 (17-214)||(44129119-44129316)
[»] chr2 (1 HSPs)
chr2 (23-209)||(24163175-24163361)
[»] chr3 (1 HSPs)
chr3 (67-209)||(37862775-37862917)
[»] chr8 (1 HSPs)
chr8 (70-214)||(35251409-35251553)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 1505522 - 1505719
Alignment:
Q  17 acatcaataaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttaga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1505522 acatcaataaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggccctgcaattttaga 1505621  T
Q  117 tcaagtagagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1505622 tcaagtagagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 1505719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 1492718 - 1492910
Alignment:
Q  22 aataaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttagatcaag 121  Q
    ||||||||||| ||||| |||||||||||||| ||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  1492718 aataaagcattagttgaggctttccaaccattgggaatctctgattacaactcaatcttttggattgcacaccctggtggacctgcaattttagaccaag 1492817  T
Q  122 tagagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    ||||||||||||||||||||||||| |||||||||| ||||||  | || ||||| |||||||||||||||||||||||||||||||| ||||    
T  1492818 tagagcaaaagttagccttaaagcccgaaaagatgagagccacacgggaggtgctaagtgaatatggaaatatgtcaagtgcatgtgtattgt 1492910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 1482744 - 1482935
Alignment:
Q  23 ataaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttagatcaagt 122  Q
    ||||||||||| | ||||||||||||||||||    ||||||| |||||||||||||| |||||||| || || |||||||| |||||| | ||||||||    
T  1482744 ataaagcattgatcgatgctttccaaccattaaacatttctgattacaactcaatcttttggattgctcatccaggtggacccgcaattcttgatcaagt 1482843  T
Q  123 agagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
     || |||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||    
T  1482844 tgaacaaaagttaggcttaaaacctgaaaagatgaaagccactagagaagtacttagtgaatatggtaacatgtcaagtgcatgtgtattgt 1482935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 1478550 - 1478741
Alignment:
Q  23 ataaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttagatcaagt 122  Q
    ||||||||||||| || |||||||||||||||    | ||||| || || ||||||||||||||||| ||||| |||||||| |||||| |||| |||||    
T  1478550 ataaagcattggtcgaggctttccaaccattaaacatctctgattataattcaatcttctggattgctcacccaggtggacccgcaattctagaccaagt 1478649  T
Q  123 agagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
     ||  ||||||||| |||||| |||||||| ||||| |||||||| ||||| |||||||||||||| || |||||||| |||||||| ||||    
T  1478650 tgaagaaaagttaggcttaaaacctgaaaaaatgaaggccactagggaagtacttagtgaatatggtaacatgtcaagcgcatgtgtattgt 1478741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 46 - 214
Target Start/End: Original strand, 1499814 - 1499982
Alignment:
Q  46 caaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttagatcaagtagagcaaaagttagccttaaagc 145  Q
    |||||||||||| | ||||| || ||||||||||| |||||||| || || ||||| ||||||||| |||||||| | ||||||||||||| ||| ||      
T  1499814 caaccattaggaatctctgattataactcaatcttttggattgctcatccgggtggtcctgcaattctagatcaaattgagcaaaagttaggcttgaaag 1499913  T
Q  146 ctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    |||||||| |||  | |  ||| |||||||||||||||||||| |||||||| ||||||| ||| ||||    
T  1499914 ctgaaaagttgagggtcgttagggaagtgcttagtgaatatggtaatatgtctagtgcatctgtattgt 1499982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 1487241 - 1487412
Alignment:
Q  43 ttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttagatcaagtagagcaaaagttagccttaa 142  Q
    ||||||||||||||  | ||||| |||||  |||| || |||||||  ||||| || |||||||||||||| || || || || ||||||||||| || |    
T  1487241 ttccaaccattaggcatctctgattacaatgcaattttttggattgtccacccaggcggacctgcaattttggaccatgttgaacaaaagttagctttga 1487340  T
Q  143 agcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    | || ||||||||||| |||||||| ||||| |||||||||||||| || ||||||||||| ||||| ||||    
T  1487341 aaccggaaaagatgaaggccactagggaagtacttagtgaatatggtaacatgtcaagtgcttgtgtattgt 1487412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 1496087 - 1496163
Alignment:
Q  67 tacaactcaatcttctggattgcacaccctggtggacctgcaattttagatcaagtagagcaaaagttagccttaaa 143  Q
    |||||| |||||||||||||||| || ||  |||||||||||||| |||||||||| ||||| ||||||| ||||||    
T  1496087 tacaacccaatcttctggattgctcatccgagtggacctgcaattatagatcaagttgagcacaagttaggcttaaa 1496163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 214
Target Start/End: Original strand, 1509712 - 1509855
Alignment:
Q  61 tctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaaag 160  Q
    ||||| ||||||||||| || |||||||| ||||| | |||| | |||||| | || ||||| |||||||| ||||||||||| |||| ||||||||| |    
T  1509712 tctgattacaactcaatattttggattgctcacccagatggagccgcaattattgaccaagttgagcaaaaattagccttaaaacctg-aaagatgaagg 1509810  T
Q  161 ccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    |         | | |||||||||||||| |||||||||||||||||||| ||||    
T  1509811 c---------aattcttagtgaatatggtaatatgtcaagtgcatgtgtattgt 1509855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 46706559 - 46706368
Alignment:
Q  23 ataaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttagatcaagt 122  Q
    |||||||||| ||||| |||||||||||||| ||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  46706559 ataaagcattagttgaggctttccaaccattgggaatttctgattacaactcaatcttttggattgcacaccctggtggccctgcaattttagatcaagt 46706460  T
Q  123 agagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46706459 agagcaaaagttagccttgaagcctgaaaagatgagagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 46706368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 5310949 - 5311139
Alignment:
Q  24 taaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttagatcaagta 123  Q
    ||||||||||||||| |||||| | ||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||||||||||||| |||||||||||    
T  5310949 taaagcattggttgaggctttcgagccattgggaatttctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagta 5311048  T
Q  124 gagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5311049 gagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgt 5311139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 5289274 - 5289077
Alignment:
Q  17 acatcaataaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttaga 116  Q
    |||||| ||||||||||||||| |||||| | ||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||||||||||||| ||||    
T  5289274 acatcactaaagcattggttgaggctttcgagccattgggaatttctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctaga 5289175  T
Q  117 tcaagtagagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    |||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5289174 tcaagtggagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgt 5289077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 5315663 - 5315853
Alignment:
Q  24 taaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttagatcaagta 123  Q
    ||||||||||||||| |||||| | ||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||||||||||||| ||||||||||     
T  5315663 taaagcattggttgaggctttcgagccattgggaatttctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtg 5315762  T
Q  124 gagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  5315763 gagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatatggaaatatgtcaagtgcgtgtgttttgt 5315853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 5284860 - 5285050
Alignment:
Q  24 taaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttagatcaagta 123  Q
    ||||||||||||||| |||||  | ||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||||||||||||| |||||||||||    
T  5284860 taaagcattggttgaggcttttgagccattgggaatttctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagta 5284959  T
Q  124 gagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    ||||||||||||||||| ||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5284960 gagcaaaagttagccttgaagcctgaaaagatgaatgcaaccagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgt 5285050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 24 - 214
Target Start/End: Original strand, 5303048 - 5303238
Alignment:
Q  24 taaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttagatcaagta 123  Q
    ||||||||||||||| |||||  | ||| | ||| ||||||| |||||||||||||| ||||||||||| || ||||||||||||||| |||||||||||    
T  5303048 taaagcattggttgacgcttttgagccactgggaatttctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagta 5303147  T
Q  124 gagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    |||||||||||| | || ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5303148 gagcaaaagttatcattgaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgt 5303238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 32530430 - 32530388
Alignment:
Q  172 gtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    |||||||||||||||||||||||||| ||||| ||||||||||    
T  32530430 gtgcttagtgaatatggaaatatgtcgagtgcttgtgttttgt 32530388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 44133324 - 44133521
Alignment:
Q  17 acatcaataaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttaga 116  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  44133324 acatcaataaagcattggttgaggctttcgaaccattaggaatttctgattacaattcaatcttttggattgcacaccctggtggacctgcaattctaga 44133423  T
Q  117 tcaagtagagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44133424 tcaagttgagcaaaagttagccttaaaacctgaaaagatgaaagccaccagagaagtgcttagtgaatatggaaatatgtcaagtgcctgtgttttgt 44133521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 44141746 - 44141943
Alignment:
Q  17 acatcaataaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttaga 116  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  44141746 acatcaataaagcattggttgaggctttcgaaccattaggaatttctgattacaattcaatcttttggattgcacaccctggtggacctgcaattctaga 44141845  T
Q  117 tcaagtagagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44141846 tcaagttgagcaaaagttagccttaaaacctgaaaagatgaaagccaccagagaagtgcttagtgaatatggaaatatgtcaagtgcctgtgttttgt 44141943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 44129119 - 44129316
Alignment:
Q  17 acatcaataaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttaga 116  Q
    ||||||||||||| |||||||| |||||| ||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  44129119 acatcaataaagctttggttgaggctttcgaaccattaggaatttctgattacaattcaatcttttggattgcacaccctggtggacctgcaattctaga 44129218  T
Q  117 tcaagtagagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44129219 tcaagttgagcaaaagttagccttaaaacctgaaaagatgaaagccaccagagaagtgcttagtgaatatggaaatatgtcaagtgcttgtgttttgt 44129316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 24163361 - 24163175
Alignment:
Q  23 ataaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggacctgcaattttagatcaagt 122  Q
    ||||||||||| |||| || ||||||||||||||  | ||||| |||||||||||||| |||||||| ||| |||||||||| |||||| ||||  || |    
T  24163361 ataaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaat 24163262  T
Q  123 agagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgt 209  Q
     ||| ||||||||||||| || |||||||||||||  ||||||||| || |||||||||||||||| || |||||||||||||||||    
T  24163261 tgaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgt 24163175  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 37862917 - 37862775
Alignment:
Q  67 tacaactcaatcttctggattgcacaccctggtggacctgcaattttagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaaagccacta 166  Q
    ||||| || ||||| ||||| || ||||| |||||||| |||||| | || ||||| || |  || |||| ||||||||| || || ||| ||||||||     
T  37862917 tacaattccatcttttggatcgcgcacccaggtggaccagcaattcttgaccaagttgaactcaaattaggcttaaagccagagaaaatgcaagccactc 37862818  T
Q  167 gagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgt 209  Q
    || | || ||||| |||||||| || ||||||||||| |||||    
T  37862817 gacatgtacttagcgaatatggtaacatgtcaagtgcgtgtgt 37862775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 214
Target Start/End: Original strand, 35251409 - 35251553
Alignment:
Q  70 aactcaatcttctggattgcacaccctggtggacctgcaattttagatcaagtagagcaaaagttagccttaaagcctgaaaagatgaaagccactagag 169  Q
    ||||||||||| |||||||| ||| | |||||||| || ||| | || ||||| ||| | ||||||| ||| |||||||||||  || |||||||| ||     
T  35251409 aactcaatcttttggattgctcacacgggtggaccagcgattcttgaccaagttgaggacaagttaggcttgaagcctgaaaaattggaagccactcgaa 35251508  T
Q  170 aagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgt 214  Q
    | ||| | |||   ||||| || ||||||||||| ||||| ||||    
T  35251509 atgtgttgagtagttatgggaacatgtcaagtgcttgtgtgttgt 35251553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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